Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4175 and Ac3H11_4176 are separated by 60 nucleotides Ac3H11_4176 and Ac3H11_4177 are separated by 127 nucleotides Ac3H11_4177 and Ac3H11_4178 are separated by 123 nucleotides
Ac3H11_4175 - TRAP-type C4-dicarboxylate transport system, large permease component, at 430,410 to 431,675
_4175
Ac3H11_4176 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 431,736 to 432,758
_4176
Ac3H11_4177 - Transcriptional regulator, GntR family, at 432,886 to 433,500
_4177
Ac3H11_4178 - Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain), at 433,624 to 435,042
_4178
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1 at 430.794 kb on + strand, within Ac3H11_4175 at 430.794 kb on + strand, within Ac3H11_4175 at 430.827 kb on + strand, within Ac3H11_4175 at 430.827 kb on + strand, within Ac3H11_4175 at 430.828 kb on - strand, within Ac3H11_4175 at 430.878 kb on + strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.989 kb on + strand, within Ac3H11_4175 at 430.989 kb on + strand, within Ac3H11_4175 at 430.990 kb on - strand, within Ac3H11_4175 at 431.163 kb on + strand, within Ac3H11_4175 at 431.164 kb on - strand, within Ac3H11_4175 at 431.164 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.284 kb on - strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.674 kb on - strand at 431.674 kb on - strand at 431.674 kb on - strand at 432.100 kb on - strand, within Ac3H11_4176 at 432.170 kb on - strand, within Ac3H11_4176 at 432.304 kb on - strand, within Ac3H11_4176 at 432.316 kb on - strand, within Ac3H11_4176 at 432.782 kb on - strand at 432.782 kb on - strand at 432.782 kb on - strand at 432.892 kb on + strand at 432.892 kb on + strand at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.235 kb on - strand, within Ac3H11_4177 at 433.235 kb on - strand, within Ac3H11_4177 at 433.235 kb on - strand, within Ac3H11_4177 at 433.235 kb on - strand, within Ac3H11_4177 at 433.342 kb on + strand, within Ac3H11_4177 at 433.343 kb on - strand, within Ac3H11_4177 at 433.343 kb on - strand, within Ac3H11_4177 at 433.348 kb on + strand, within Ac3H11_4177 at 433.349 kb on - strand, within Ac3H11_4177 at 433.349 kb on - strand, within Ac3H11_4177
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 430,794 + Ac3H11_4175 0.30 +1.2 430,794 + Ac3H11_4175 0.30 +0.1 430,827 + Ac3H11_4175 0.33 +0.8 430,827 + Ac3H11_4175 0.33 -1.0 430,828 - Ac3H11_4175 0.33 +0.4 430,878 + Ac3H11_4175 0.37 +0.7 430,879 - Ac3H11_4175 0.37 +0.5 430,879 - Ac3H11_4175 0.37 +0.7 430,879 - Ac3H11_4175 0.37 +0.3 430,989 + Ac3H11_4175 0.46 +0.7 430,989 + Ac3H11_4175 0.46 +0.0 430,990 - Ac3H11_4175 0.46 +0.5 431,163 + Ac3H11_4175 0.59 +1.0 431,164 - Ac3H11_4175 0.60 -0.4 431,164 - Ac3H11_4175 0.60 +0.5 431,224 - Ac3H11_4175 0.64 +0.3 431,224 - Ac3H11_4175 0.64 -0.7 431,224 - Ac3H11_4175 0.64 -0.6 431,284 - Ac3H11_4175 0.69 -0.1 431,454 + Ac3H11_4175 0.82 +0.3 431,454 + Ac3H11_4175 0.82 -0.7 431,454 + Ac3H11_4175 0.82 +0.4 431,455 - Ac3H11_4175 0.83 +0.6 431,455 - Ac3H11_4175 0.83 +0.5 431,455 - Ac3H11_4175 0.83 +0.6 431,674 - -0.0 431,674 - +0.8 431,674 - -0.0 432,100 - Ac3H11_4176 0.36 -0.0 432,170 - Ac3H11_4176 0.42 +0.2 432,304 - Ac3H11_4176 0.56 +0.6 432,316 - Ac3H11_4176 0.57 +0.2 432,782 - +0.0 432,782 - -0.5 432,782 - -1.4 432,892 + -0.1 432,892 + +0.8 433,234 + Ac3H11_4177 0.57 -1.0 433,234 + Ac3H11_4177 0.57 -0.3 433,234 + Ac3H11_4177 0.57 -1.0 433,234 + Ac3H11_4177 0.57 -0.7 433,234 + Ac3H11_4177 0.57 -2.5 433,234 + Ac3H11_4177 0.57 +0.1 433,234 + Ac3H11_4177 0.57 -1.1 433,235 - Ac3H11_4177 0.57 -1.1 433,235 - Ac3H11_4177 0.57 -0.2 433,235 - Ac3H11_4177 0.57 -0.8 433,235 - Ac3H11_4177 0.57 -2.6 433,342 + Ac3H11_4177 0.74 +0.0 433,343 - Ac3H11_4177 0.74 -0.8 433,343 - Ac3H11_4177 0.74 -0.0 433,348 + Ac3H11_4177 0.75 +0.7 433,349 - Ac3H11_4177 0.75 -2.1 433,349 - Ac3H11_4177 0.75 +0.0
Or see this region's nucleotide sequence