Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3839 and Ac3H11_3840 are separated by 50 nucleotides Ac3H11_3840 and Ac3H11_3841 are separated by 73 nucleotides Ac3H11_3841 and Ac3H11_3842 are separated by 150 nucleotides
Ac3H11_3839 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 55,742 to 56,623
_3839
Ac3H11_3840 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 56,674 to 57,519
_3840
Ac3H11_3841 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 57,593 to 58,315
_3841
Ac3H11_3842 - Large protein containing transglutaminase-like domain, at 58,466 to 61,963
_3842
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 55.682 kb on + strand at 55.682 kb on + strand at 55.682 kb on + strand at 55.683 kb on - strand at 55.683 kb on - strand at 55.686 kb on + strand at 55.686 kb on + strand at 55.686 kb on + strand at 55.687 kb on - strand at 55.687 kb on - strand at 55.687 kb on - strand at 55.695 kb on + strand at 55.776 kb on - strand at 55.836 kb on + strand, within Ac3H11_3839 at 55.884 kb on - strand, within Ac3H11_3839 at 56.009 kb on + strand, within Ac3H11_3839 at 56.009 kb on + strand, within Ac3H11_3839 at 56.009 kb on + strand, within Ac3H11_3839 at 56.010 kb on - strand, within Ac3H11_3839 at 56.010 kb on - strand, within Ac3H11_3839 at 56.091 kb on - strand, within Ac3H11_3839 at 56.091 kb on - strand, within Ac3H11_3839 at 56.164 kb on - strand, within Ac3H11_3839 at 56.164 kb on - strand, within Ac3H11_3839 at 56.164 kb on - strand, within Ac3H11_3839 at 56.164 kb on - strand, within Ac3H11_3839 at 56.567 kb on + strand at 56.567 kb on + strand at 56.567 kb on + strand at 56.567 kb on + strand at 56.567 kb on + strand at 56.567 kb on + strand at 56.567 kb on + strand at 56.567 kb on + strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.568 kb on - strand at 56.873 kb on - strand, within Ac3H11_3840 at 56.956 kb on + strand, within Ac3H11_3840 at 57.124 kb on + strand, within Ac3H11_3840 at 57.124 kb on + strand, within Ac3H11_3840 at 57.242 kb on - strand, within Ac3H11_3840 at 57.394 kb on + strand, within Ac3H11_3840 at 57.395 kb on - strand, within Ac3H11_3840 at 57.550 kb on + strand at 57.886 kb on - strand, within Ac3H11_3841 at 57.886 kb on - strand, within Ac3H11_3841 at 58.296 kb on - strand at 58.315 kb on + strand at 58.316 kb on - strand at 58.451 kb on + strand at 58.451 kb on + strand at 58.451 kb on + strand at 58.451 kb on + strand at 58.452 kb on - strand at 58.452 kb on - strand at 58.465 kb on + strand at 58.465 kb on + strand at 58.465 kb on + strand at 58.465 kb on + strand at 58.465 kb on + strand at 58.466 kb on - strand at 58.466 kb on - strand at 58.466 kb on - strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.502 kb on + strand at 58.503 kb on - strand at 58.503 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 55,682 + +1.1 55,682 + -0.2 55,682 + +0.5 55,683 - -0.8 55,683 - +0.7 55,686 + -0.1 55,686 + +1.1 55,686 + -0.7 55,687 - -1.2 55,687 - -1.2 55,687 - -0.4 55,695 + +0.1 55,776 - -2.7 55,836 + Ac3H11_3839 0.11 -2.7 55,884 - Ac3H11_3839 0.16 -1.7 56,009 + Ac3H11_3839 0.30 -1.8 56,009 + Ac3H11_3839 0.30 -1.2 56,009 + Ac3H11_3839 0.30 -1.5 56,010 - Ac3H11_3839 0.30 +0.5 56,010 - Ac3H11_3839 0.30 -3.4 56,091 - Ac3H11_3839 0.40 -2.6 56,091 - Ac3H11_3839 0.40 -4.0 56,164 - Ac3H11_3839 0.48 -2.8 56,164 - Ac3H11_3839 0.48 -2.9 56,164 - Ac3H11_3839 0.48 -3.3 56,164 - Ac3H11_3839 0.48 -3.0 56,567 + -1.2 56,567 + -1.0 56,567 + -0.9 56,567 + -1.7 56,567 + -1.7 56,567 + -1.0 56,567 + -1.1 56,567 + -2.1 56,568 - -3.0 56,568 - -3.3 56,568 - -2.3 56,568 - -1.5 56,568 - -1.8 56,568 - -3.4 56,568 - -3.0 56,568 - +0.7 56,568 - -2.9 56,568 - -0.0 56,873 - Ac3H11_3840 0.24 -0.5 56,956 + Ac3H11_3840 0.33 +1.1 57,124 + Ac3H11_3840 0.53 +0.0 57,124 + Ac3H11_3840 0.53 -0.4 57,242 - Ac3H11_3840 0.67 +0.3 57,394 + Ac3H11_3840 0.85 -0.5 57,395 - Ac3H11_3840 0.85 -0.1 57,550 + -0.3 57,886 - Ac3H11_3841 0.41 +0.2 57,886 - Ac3H11_3841 0.41 +0.1 58,296 - -0.1 58,315 + -0.5 58,316 - +0.4 58,451 + -0.0 58,451 + -0.8 58,451 + +0.5 58,451 + -0.4 58,452 - +0.2 58,452 - -0.5 58,465 + +0.1 58,465 + +1.1 58,465 + -0.4 58,465 + -1.2 58,465 + -1.2 58,466 - -0.3 58,466 - +0.4 58,466 - -0.0 58,502 + +1.1 58,502 + -0.2 58,502 + +0.1 58,503 - -0.0 58,503 - -0.0
Or see this region's nucleotide sequence