Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_279

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_278 and Ac3H11_279 are separated by 100 nucleotidesAc3H11_279 and Ac3H11_280 are separated by 123 nucleotidesAc3H11_280 and Ac3H11_281 are separated by 264 nucleotides Ac3H11_278 - FIG002207: Probable transmembrane protein, at 102,510 to 103,604 _278 Ac3H11_279 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 103,705 to 104,502 _279 Ac3H11_280 - hypothetical protein, at 104,626 to 104,910 _280 Ac3H11_281 - FIG00932369: hypothetical protein, at 105,175 to 105,696 _281 Position (kb) 103 104 105Strain fitness (log2 ratio) -1 0 1at 103.602 kb on + strandat 103.602 kb on + strandat 103.602 kb on + strandat 103.602 kb on + strandat 103.603 kb on - strandat 103.603 kb on - strandat 103.603 kb on - strandat 103.672 kb on - strandat 103.934 kb on - strand, within Ac3H11_279at 104.275 kb on + strand, within Ac3H11_279at 104.276 kb on - strand, within Ac3H11_279at 104.276 kb on - strand, within Ac3H11_279at 104.330 kb on + strand, within Ac3H11_279at 104.330 kb on + strand, within Ac3H11_279at 104.330 kb on + strand, within Ac3H11_279at 104.330 kb on + strand, within Ac3H11_279at 104.331 kb on - strand, within Ac3H11_279at 104.331 kb on - strand, within Ac3H11_279at 104.331 kb on - strand, within Ac3H11_279at 104.331 kb on - strand, within Ac3H11_279at 104.331 kb on - strand, within Ac3H11_279at 104.331 kb on - strand, within Ac3H11_279at 104.331 kb on - strand, within Ac3H11_279at 104.331 kb on - strand, within Ac3H11_279at 104.627 kb on + strandat 104.628 kb on - strandat 104.978 kb on + strandat 104.979 kb on - strandat 104.979 kb on - strandat 105.030 kb on - strandat 105.031 kb on + strandat 105.032 kb on - strandat 105.048 kb on + strandat 105.048 kb on + strandat 105.056 kb on - strandat 105.056 kb on - strandat 105.074 kb on - strandat 105.074 kb on - strandat 105.074 kb on - strandat 105.074 kb on - strandat 105.176 kb on + strandat 105.177 kb on - strandat 105.177 kb on - strandat 105.177 kb on - strandat 105.177 kb on - strandat 105.177 kb on - strandat 105.449 kb on + strand, within Ac3H11_281at 105.449 kb on + strand, within Ac3H11_281at 105.449 kb on + strand, within Ac3H11_281at 105.449 kb on + strand, within Ac3H11_281at 105.449 kb on + strand, within Ac3H11_281at 105.450 kb on - strand, within Ac3H11_281at 105.450 kb on - strand, within Ac3H11_281at 105.450 kb on - strand, within Ac3H11_281at 105.450 kb on - strand, within Ac3H11_281at 105.450 kb on - strand, within Ac3H11_281at 105.450 kb on - strand, within Ac3H11_281at 105.450 kb on - strand, within Ac3H11_281

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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103,602 + -0.7
103,602 + -0.1
103,602 + -0.6
103,602 + +0.1
103,603 - -0.1
103,603 - +0.3
103,603 - -0.4
103,672 - +0.1
103,934 - Ac3H11_279 0.29 +0.5
104,275 + Ac3H11_279 0.71 +0.9
104,276 - Ac3H11_279 0.72 +0.5
104,276 - Ac3H11_279 0.72 +0.0
104,330 + Ac3H11_279 0.78 -0.1
104,330 + Ac3H11_279 0.78 +0.7
104,330 + Ac3H11_279 0.78 -1.0
104,330 + Ac3H11_279 0.78 +0.1
104,331 - Ac3H11_279 0.78 -0.6
104,331 - Ac3H11_279 0.78 -1.1
104,331 - Ac3H11_279 0.78 +0.2
104,331 - Ac3H11_279 0.78 +0.1
104,331 - Ac3H11_279 0.78 +0.1
104,331 - Ac3H11_279 0.78 -0.4
104,331 - Ac3H11_279 0.78 -0.3
104,331 - Ac3H11_279 0.78 +0.2
104,627 + +0.1
104,628 - -0.0
104,978 + -0.5
104,979 - +0.4
104,979 - -0.0
105,030 - +1.1
105,031 + -0.2
105,032 - -0.4
105,048 + -0.2
105,048 + -0.2
105,056 - -0.3
105,056 - +1.0
105,074 - -0.1
105,074 - +0.2
105,074 - -0.3
105,074 - +0.7
105,176 + -1.2
105,177 - -0.8
105,177 - -0.2
105,177 - +0.4
105,177 - -0.4
105,177 - -1.3
105,449 + Ac3H11_281 0.52 -0.3
105,449 + Ac3H11_281 0.52 -0.1
105,449 + Ac3H11_281 0.52 -0.7
105,449 + Ac3H11_281 0.52 -0.2
105,449 + Ac3H11_281 0.52 -1.2
105,450 - Ac3H11_281 0.53 +0.6
105,450 - Ac3H11_281 0.53 +0.1
105,450 - Ac3H11_281 0.53 +0.7
105,450 - Ac3H11_281 0.53 -0.7
105,450 - Ac3H11_281 0.53 -0.2
105,450 - Ac3H11_281 0.53 +1.5
105,450 - Ac3H11_281 0.53 +0.3

Or see this region's nucleotide sequence