Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1846

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1845 and Ac3H11_1846 are separated by 254 nucleotides Ac3H11_1845 - PUTATIVE LIPASE TRANSMEMBRANE PROTEIN, at 47,171 to 48,145 _1845 Ac3H11_1846 - Transposase and inactivated derivatives, IS30 family, at 48,400 to 49,371 _1846 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1at 47.660 kb on + strand, within Ac3H11_1845at 47.660 kb on + strand, within Ac3H11_1845at 47.660 kb on + strand, within Ac3H11_1845at 47.660 kb on + strand, within Ac3H11_1845at 47.660 kb on + strand, within Ac3H11_1845at 47.660 kb on + strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.661 kb on - strand, within Ac3H11_1845at 47.705 kb on + strand, within Ac3H11_1845at 47.706 kb on - strand, within Ac3H11_1845at 47.706 kb on - strand, within Ac3H11_1845at 47.986 kb on + strand, within Ac3H11_1845at 47.986 kb on + strand, within Ac3H11_1845at 47.986 kb on + strand, within Ac3H11_1845at 47.986 kb on + strand, within Ac3H11_1845at 47.987 kb on - strand, within Ac3H11_1845at 47.987 kb on - strand, within Ac3H11_1845at 47.987 kb on - strand, within Ac3H11_1845at 47.987 kb on - strand, within Ac3H11_1845at 48.143 kb on + strandat 48.143 kb on + strandat 48.143 kb on + strandat 48.144 kb on - strandat 48.144 kb on - strandat 48.144 kb on - strandat 48.191 kb on - strandat 48.191 kb on - strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.406 kb on + strandat 48.433 kb on + strandat 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.553 kb on + strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.554 kb on - strand, within Ac3H11_1846at 48.652 kb on + strand, within Ac3H11_1846at 48.653 kb on - strand, within Ac3H11_1846at 48.653 kb on - strand, within Ac3H11_1846at 48.653 kb on - strand, within Ac3H11_1846at 48.653 kb on - strand, within Ac3H11_1846at 48.653 kb on - strand, within Ac3H11_1846at 48.653 kb on - strand, within Ac3H11_1846at 48.668 kb on + strand, within Ac3H11_1846at 48.668 kb on + strand, within Ac3H11_1846at 48.669 kb on - strand, within Ac3H11_1846at 48.669 kb on - strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.732 kb on + strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.733 kb on - strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.736 kb on + strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.737 kb on - strand, within Ac3H11_1846at 48.754 kb on - strand, within Ac3H11_1846at 48.964 kb on + strand, within Ac3H11_1846at 48.964 kb on + strand, within Ac3H11_1846at 48.964 kb on + strand, within Ac3H11_1846at 48.964 kb on + strand, within Ac3H11_1846at 48.964 kb on + strand, within Ac3H11_1846at 48.965 kb on - strand, within Ac3H11_1846at 48.965 kb on - strand, within Ac3H11_1846at 48.965 kb on - strand, within Ac3H11_1846at 49.129 kb on + strand, within Ac3H11_1846at 49.129 kb on + strand, within Ac3H11_1846at 49.129 kb on + strand, within Ac3H11_1846at 49.129 kb on + strand, within Ac3H11_1846at 49.129 kb on + strand, within Ac3H11_1846at 49.129 kb on - strand, within Ac3H11_1846at 49.130 kb on - strand, within Ac3H11_1846at 49.130 kb on - strand, within Ac3H11_1846at 49.130 kb on - strand, within Ac3H11_1846at 49.130 kb on - strand, within Ac3H11_1846at 49.130 kb on - strand, within Ac3H11_1846at 49.130 kb on - strand, within Ac3H11_1846at 49.130 kb on - strand, within Ac3H11_1846at 49.190 kb on + strand, within Ac3H11_1846at 49.190 kb on + strand, within Ac3H11_1846at 49.191 kb on - strand, within Ac3H11_1846at 49.191 kb on - strand, within Ac3H11_1846at 49.191 kb on - strand, within Ac3H11_1846at 49.191 kb on - strand, within Ac3H11_1846at 49.191 kb on - strand, within Ac3H11_1846at 49.191 kb on - strand, within Ac3H11_1846at 49.191 kb on - strand, within Ac3H11_1846at 49.198 kb on + strand, within Ac3H11_1846at 49.198 kb on + strand, within Ac3H11_1846at 49.198 kb on + strand, within Ac3H11_1846at 49.198 kb on + strand, within Ac3H11_1846at 49.199 kb on - strand, within Ac3H11_1846at 49.199 kb on - strand, within Ac3H11_1846at 49.199 kb on - strand, within Ac3H11_1846at 49.199 kb on - strand, within Ac3H11_1846at 49.199 kb on - strand, within Ac3H11_1846at 49.259 kb on - strand, within Ac3H11_1846at 49.341 kb on + strandat 49.341 kb on + strandat 49.341 kb on + strandat 49.394 kb on + strandat 49.394 kb on + strandat 49.408 kb on - strandat 49.419 kb on - strandat 49.843 kb on - strandat 49.843 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
47,660 + Ac3H11_1845 0.50 +0.2
47,660 + Ac3H11_1845 0.50 -0.3
47,660 + Ac3H11_1845 0.50 +0.3
47,660 + Ac3H11_1845 0.50 +0.3
47,660 + Ac3H11_1845 0.50 +0.5
47,660 + Ac3H11_1845 0.50 -0.1
47,661 - Ac3H11_1845 0.50 +0.0
47,661 - Ac3H11_1845 0.50 +0.2
47,661 - Ac3H11_1845 0.50 -0.2
47,661 - Ac3H11_1845 0.50 +0.5
47,661 - Ac3H11_1845 0.50 -0.6
47,661 - Ac3H11_1845 0.50 -3.0
47,661 - Ac3H11_1845 0.50 -0.4
47,661 - Ac3H11_1845 0.50 -0.5
47,661 - Ac3H11_1845 0.50 -0.1
47,661 - Ac3H11_1845 0.50 -0.1
47,705 + Ac3H11_1845 0.55 +0.5
47,706 - Ac3H11_1845 0.55 -0.2
47,706 - Ac3H11_1845 0.55 +0.1
47,986 + Ac3H11_1845 0.84 +1.6
47,986 + Ac3H11_1845 0.84 +0.7
47,986 + Ac3H11_1845 0.84 +0.5
47,986 + Ac3H11_1845 0.84 +0.7
47,987 - Ac3H11_1845 0.84 -0.0
47,987 - Ac3H11_1845 0.84 -0.2
47,987 - Ac3H11_1845 0.84 +1.7
47,987 - Ac3H11_1845 0.84 -0.4
48,143 + +0.6
48,143 + -0.1
48,143 + -1.4
48,144 - -0.1
48,144 - +0.5
48,144 - +0.2
48,191 - -0.3
48,191 - -0.3
48,406 + -0.6
48,406 + +0.1
48,406 + -0.5
48,406 + -0.3
48,406 + +1.3
48,406 + +0.7
48,406 + -0.3
48,406 + +0.6
48,406 + +0.2
48,406 + +1.2
48,433 + -0.0
48,553 + Ac3H11_1846 0.16 +0.0
48,553 + Ac3H11_1846 0.16 +0.2
48,553 + Ac3H11_1846 0.16 +1.0
48,553 + Ac3H11_1846 0.16 -0.7
48,553 + Ac3H11_1846 0.16 +1.2
48,553 + Ac3H11_1846 0.16 +0.2
48,553 + Ac3H11_1846 0.16 +0.2
48,553 + Ac3H11_1846 0.16 +0.3
48,553 + Ac3H11_1846 0.16 +0.5
48,553 + Ac3H11_1846 0.16 +0.1
48,554 - Ac3H11_1846 0.16 -0.2
48,554 - Ac3H11_1846 0.16 +0.8
48,554 - Ac3H11_1846 0.16 -1.8
48,554 - Ac3H11_1846 0.16 -0.1
48,554 - Ac3H11_1846 0.16 +0.3
48,554 - Ac3H11_1846 0.16 +0.4
48,554 - Ac3H11_1846 0.16 +0.0
48,554 - Ac3H11_1846 0.16 -0.7
48,554 - Ac3H11_1846 0.16 -1.2
48,554 - Ac3H11_1846 0.16 -1.6
48,652 + Ac3H11_1846 0.26 +0.5
48,653 - Ac3H11_1846 0.26 +0.2
48,653 - Ac3H11_1846 0.26 -1.1
48,653 - Ac3H11_1846 0.26 +0.3
48,653 - Ac3H11_1846 0.26 -2.2
48,653 - Ac3H11_1846 0.26 +0.3
48,653 - Ac3H11_1846 0.26 +0.1
48,668 + Ac3H11_1846 0.28 -0.5
48,668 + Ac3H11_1846 0.28 -0.6
48,669 - Ac3H11_1846 0.28 -0.8
48,669 - Ac3H11_1846 0.28 +0.3
48,732 + Ac3H11_1846 0.34 -0.5
48,732 + Ac3H11_1846 0.34 -1.0
48,732 + Ac3H11_1846 0.34 -0.9
48,732 + Ac3H11_1846 0.34 +0.4
48,732 + Ac3H11_1846 0.34 -0.4
48,732 + Ac3H11_1846 0.34 -1.1
48,732 + Ac3H11_1846 0.34 -0.8
48,732 + Ac3H11_1846 0.34 -1.2
48,732 + Ac3H11_1846 0.34 +0.4
48,732 + Ac3H11_1846 0.34 -0.5
48,732 + Ac3H11_1846 0.34 +0.1
48,733 - Ac3H11_1846 0.34 +1.1
48,733 - Ac3H11_1846 0.34 +0.2
48,733 - Ac3H11_1846 0.34 -0.3
48,733 - Ac3H11_1846 0.34 +0.7
48,733 - Ac3H11_1846 0.34 -1.2
48,733 - Ac3H11_1846 0.34 -0.7
48,733 - Ac3H11_1846 0.34 -1.6
48,733 - Ac3H11_1846 0.34 +1.0
48,733 - Ac3H11_1846 0.34 -0.8
48,733 - Ac3H11_1846 0.34 -0.1
48,736 + Ac3H11_1846 0.35 -0.2
48,736 + Ac3H11_1846 0.35 -0.3
48,736 + Ac3H11_1846 0.35 +0.7
48,736 + Ac3H11_1846 0.35 -0.3
48,736 + Ac3H11_1846 0.35 -1.2
48,736 + Ac3H11_1846 0.35 -0.3
48,736 + Ac3H11_1846 0.35 -0.0
48,736 + Ac3H11_1846 0.35 -0.6
48,736 + Ac3H11_1846 0.35 -0.5
48,736 + Ac3H11_1846 0.35 +0.4
48,736 + Ac3H11_1846 0.35 -1.4
48,737 - Ac3H11_1846 0.35 +0.3
48,737 - Ac3H11_1846 0.35 -0.1
48,737 - Ac3H11_1846 0.35 -1.7
48,737 - Ac3H11_1846 0.35 -0.4
48,737 - Ac3H11_1846 0.35 +0.3
48,737 - Ac3H11_1846 0.35 -0.1
48,737 - Ac3H11_1846 0.35 +0.1
48,737 - Ac3H11_1846 0.35 +0.7
48,737 - Ac3H11_1846 0.35 -0.9
48,737 - Ac3H11_1846 0.35 -0.6
48,754 - Ac3H11_1846 0.36 -0.6
48,964 + Ac3H11_1846 0.58 -0.2
48,964 + Ac3H11_1846 0.58 +0.0
48,964 + Ac3H11_1846 0.58 +0.9
48,964 + Ac3H11_1846 0.58 +0.2
48,964 + Ac3H11_1846 0.58 -0.9
48,965 - Ac3H11_1846 0.58 -0.1
48,965 - Ac3H11_1846 0.58 +0.3
48,965 - Ac3H11_1846 0.58 -0.7
49,129 + Ac3H11_1846 0.75 +0.0
49,129 + Ac3H11_1846 0.75 +0.6
49,129 + Ac3H11_1846 0.75 -1.1
49,129 + Ac3H11_1846 0.75 -0.7
49,129 + Ac3H11_1846 0.75 +1.4
49,129 - Ac3H11_1846 0.75 -0.1
49,130 - Ac3H11_1846 0.75 -1.6
49,130 - Ac3H11_1846 0.75 +0.9
49,130 - Ac3H11_1846 0.75 -0.1
49,130 - Ac3H11_1846 0.75 +0.1
49,130 - Ac3H11_1846 0.75 -0.7
49,130 - Ac3H11_1846 0.75 -1.1
49,130 - Ac3H11_1846 0.75 -0.2
49,190 + Ac3H11_1846 0.81 +0.6
49,190 + Ac3H11_1846 0.81 -0.4
49,191 - Ac3H11_1846 0.81 +1.3
49,191 - Ac3H11_1846 0.81 +0.1
49,191 - Ac3H11_1846 0.81 -2.0
49,191 - Ac3H11_1846 0.81 -0.4
49,191 - Ac3H11_1846 0.81 -0.3
49,191 - Ac3H11_1846 0.81 +0.4
49,191 - Ac3H11_1846 0.81 -0.6
49,198 + Ac3H11_1846 0.82 -0.3
49,198 + Ac3H11_1846 0.82 -0.3
49,198 + Ac3H11_1846 0.82 -0.2
49,198 + Ac3H11_1846 0.82 +0.2
49,199 - Ac3H11_1846 0.82 +0.1
49,199 - Ac3H11_1846 0.82 -0.9
49,199 - Ac3H11_1846 0.82 +0.6
49,199 - Ac3H11_1846 0.82 +0.0
49,199 - Ac3H11_1846 0.82 +0.5
49,259 - Ac3H11_1846 0.88 -1.0
49,341 + +0.2
49,341 + +0.4
49,341 + +0.3
49,394 + +0.2
49,394 + -0.8
49,408 - +0.2
49,419 - +0.8
49,843 - -0.3
49,843 - +0.4

Or see this region's nucleotide sequence