Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1261 and Ac3H11_1262 are separated by 53 nucleotides Ac3H11_1262 and Ac3H11_1263 are separated by 148 nucleotides Ac3H11_1263 and Ac3H11_1264 are separated by 80 nucleotides
Ac3H11_1261 - Sensory histidine kinase QseC, at 79,953 to 81,308
_1261
Ac3H11_1262 - probable two-component system response regulator, at 81,362 to 82,018
_1262
Ac3H11_1263 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 82,167 to 82,841
_1263
Ac3H11_1264 - Sensor protein basS/pmrB (EC 2.7.3.-), at 82,922 to 84,373
_1264
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.946 kb on + strand, within Ac3H11_1261 at 80.946 kb on + strand, within Ac3H11_1261 at 80.946 kb on + strand, within Ac3H11_1261 at 80.947 kb on - strand, within Ac3H11_1261 at 81.726 kb on + strand, within Ac3H11_1262 at 81.727 kb on - strand, within Ac3H11_1262 at 81.727 kb on - strand, within Ac3H11_1262 at 82.093 kb on + strand at 82.094 kb on - strand at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.461 kb on + strand, within Ac3H11_1263 at 82.462 kb on - strand, within Ac3H11_1263 at 82.569 kb on + strand, within Ac3H11_1263 at 82.569 kb on + strand, within Ac3H11_1263 at 82.569 kb on + strand, within Ac3H11_1263 at 82.570 kb on - strand, within Ac3H11_1263 at 82.570 kb on - strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.746 kb on + strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.747 kb on - strand, within Ac3H11_1263 at 82.842 kb on + strand at 82.842 kb on + strand at 82.843 kb on - strand at 82.843 kb on - strand at 82.857 kb on + strand at 82.858 kb on - strand at 82.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 80,946 + Ac3H11_1261 0.73 +0.4 80,946 + Ac3H11_1261 0.73 +1.1 80,946 + Ac3H11_1261 0.73 -0.6 80,947 - Ac3H11_1261 0.73 -1.0 81,726 + Ac3H11_1262 0.55 +0.6 81,727 - Ac3H11_1262 0.56 +0.3 81,727 - Ac3H11_1262 0.56 -1.4 82,093 + +0.7 82,094 - -2.5 82,461 + Ac3H11_1263 0.44 -2.2 82,461 + Ac3H11_1263 0.44 +0.5 82,461 + Ac3H11_1263 0.44 -2.0 82,461 + Ac3H11_1263 0.44 -2.0 82,461 + Ac3H11_1263 0.44 +0.6 82,461 + Ac3H11_1263 0.44 -1.7 82,461 + Ac3H11_1263 0.44 +0.3 82,461 + Ac3H11_1263 0.44 -0.1 82,461 + Ac3H11_1263 0.44 -0.4 82,461 + Ac3H11_1263 0.44 -0.0 82,462 - Ac3H11_1263 0.44 -0.4 82,569 + Ac3H11_1263 0.60 -1.1 82,569 + Ac3H11_1263 0.60 -1.0 82,569 + Ac3H11_1263 0.60 -2.6 82,570 - Ac3H11_1263 0.60 -1.3 82,570 - Ac3H11_1263 0.60 -1.6 82,746 + Ac3H11_1263 0.86 -0.2 82,746 + Ac3H11_1263 0.86 -2.4 82,746 + Ac3H11_1263 0.86 -1.3 82,746 + Ac3H11_1263 0.86 -0.4 82,746 + Ac3H11_1263 0.86 -0.4 82,746 + Ac3H11_1263 0.86 -1.1 82,746 + Ac3H11_1263 0.86 -0.9 82,746 + Ac3H11_1263 0.86 -0.9 82,746 + Ac3H11_1263 0.86 +0.5 82,746 + Ac3H11_1263 0.86 -0.7 82,747 - Ac3H11_1263 0.86 +0.3 82,747 - Ac3H11_1263 0.86 -0.1 82,747 - Ac3H11_1263 0.86 -0.4 82,747 - Ac3H11_1263 0.86 -0.6 82,747 - Ac3H11_1263 0.86 -1.1 82,747 - Ac3H11_1263 0.86 +0.4 82,747 - Ac3H11_1263 0.86 -1.2 82,747 - Ac3H11_1263 0.86 -1.5 82,747 - Ac3H11_1263 0.86 -1.4 82,842 + +0.8 82,842 + -0.1 82,843 - +0.5 82,843 - +1.9 82,857 + +0.8 82,858 - -0.1 82,858 - -0.7
Or see this region's nucleotide sequence