Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1260 and Ac3H11_1261 are separated by 203 nucleotides Ac3H11_1261 and Ac3H11_1262 are separated by 53 nucleotides Ac3H11_1262 and Ac3H11_1263 are separated by 148 nucleotides
Ac3H11_1260 - Beta-lactamase class C family protein, at 78,640 to 79,749
_1260
Ac3H11_1261 - Sensory histidine kinase QseC, at 79,953 to 81,308
_1261
Ac3H11_1262 - probable two-component system response regulator, at 81,362 to 82,018
_1262
Ac3H11_1263 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 82,167 to 82,841
_1263
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 79.193 kb on + strand, within Ac3H11_1260 at 79.193 kb on + strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.194 kb on - strand, within Ac3H11_1260 at 79.208 kb on + strand, within Ac3H11_1260 at 79.209 kb on - strand, within Ac3H11_1260 at 79.418 kb on + strand, within Ac3H11_1260 at 79.418 kb on + strand, within Ac3H11_1260 at 79.831 kb on - strand at 80.142 kb on + strand, within Ac3H11_1261 at 80.142 kb on + strand, within Ac3H11_1261 at 80.142 kb on + strand, within Ac3H11_1261 at 80.143 kb on - strand, within Ac3H11_1261 at 80.946 kb on + strand, within Ac3H11_1261 at 80.946 kb on + strand, within Ac3H11_1261 at 80.946 kb on + strand, within Ac3H11_1261 at 80.947 kb on - strand, within Ac3H11_1261 at 81.726 kb on + strand, within Ac3H11_1262 at 81.727 kb on - strand, within Ac3H11_1262 at 81.727 kb on - strand, within Ac3H11_1262 at 82.093 kb on + strand at 82.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 79,193 + Ac3H11_1260 0.50 -0.4 79,193 + Ac3H11_1260 0.50 +0.2 79,194 - Ac3H11_1260 0.50 -0.2 79,194 - Ac3H11_1260 0.50 +0.3 79,194 - Ac3H11_1260 0.50 -1.6 79,194 - Ac3H11_1260 0.50 +0.2 79,194 - Ac3H11_1260 0.50 -1.0 79,208 + Ac3H11_1260 0.51 -0.5 79,209 - Ac3H11_1260 0.51 +1.0 79,418 + Ac3H11_1260 0.70 +0.7 79,418 + Ac3H11_1260 0.70 +0.3 79,831 - +0.8 80,142 + Ac3H11_1261 0.14 +0.9 80,142 + Ac3H11_1261 0.14 -0.7 80,142 + Ac3H11_1261 0.14 +0.2 80,143 - Ac3H11_1261 0.14 -0.1 80,946 + Ac3H11_1261 0.73 +0.4 80,946 + Ac3H11_1261 0.73 +1.1 80,946 + Ac3H11_1261 0.73 -0.6 80,947 - Ac3H11_1261 0.73 -1.0 81,726 + Ac3H11_1262 0.55 +0.6 81,727 - Ac3H11_1262 0.56 +0.3 81,727 - Ac3H11_1262 0.56 -1.4 82,093 + +0.7 82,094 - -2.5
Or see this region's nucleotide sequence