Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05625

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
1,078,657	+		MMP_RS05620	0.17	-1.8
1,078,668	-		MMP_RS05620	0.19	+0.1
1,078,711	-		MMP_RS05620	0.23	+0.6
1,078,711	-		MMP_RS05620	0.23	+2.0
1,078,711	-		MMP_RS05620	0.23	-2.9
1,078,711	-		MMP_RS05620	0.23	-4.7
1,078,712	+		MMP_RS05620	0.23	-0.7
1,078,712	+		MMP_RS05620	0.23	-0.9
1,078,712	+		MMP_RS05620	0.23	-0.1
1,078,751	-		MMP_RS05620	0.26	-2.3
1,078,762	+		MMP_RS05620	0.28	+0.4
1,078,762	+		MMP_RS05620	0.28	-0.9
1,078,771	-		MMP_RS05620	0.28	-1.2
1,078,772	+		MMP_RS05620	0.28	+0.7
1,078,773	-		MMP_RS05620	0.29	-0.1
1,078,777	+		MMP_RS05620	0.29	-0.1
1,078,803	+		MMP_RS05620	0.31	+0.4
1,078,842	-		MMP_RS05620	0.35	-4.4
1,078,867	+		MMP_RS05620	0.38	-0.8
1,078,898	-		MMP_RS05620	0.40	+0.8
1,078,995	-		MMP_RS05620	0.50	-0.4
1,079,011	-		MMP_RS05620	0.51	+0.3
1,079,012	+		MMP_RS05620	0.51	-0.5
1,079,012	+		MMP_RS05620	0.51	-0.0
1,079,024	+		MMP_RS05620	0.53	+0.7
1,079,062	-		MMP_RS05620	0.56	-2.0
1,079,062	-		MMP_RS05620	0.56	-1.1
1,079,062	-		MMP_RS05620	0.56	+0.6
1,079,063	+		MMP_RS05620	0.56	-0.1
1,079,063	+		MMP_RS05620	0.56	+0.9
1,079,063	+		MMP_RS05620	0.56	-0.2
1,079,087	+		MMP_RS05620	0.59	-1.0
1,079,094	+		MMP_RS05620	0.59	+1.6
1,079,175	-		MMP_RS05620	0.67	+0.3
1,079,176	+		MMP_RS05620	0.67	-0.8
1,079,214	-		MMP_RS05620	0.71	-0.5
1,079,236	-		MMP_RS05620	0.73	-0.9
1,079,237	+		MMP_RS05620	0.73	+0.3
1,079,279	+		MMP_RS05620	0.77	-0.5
1,079,302	+		MMP_RS05620	0.79	-4.9
1,079,325	-		MMP_RS05620	0.81	+0.1
1,079,325	-		MMP_RS05620	0.81	-0.7
1,079,326	+		MMP_RS05620	0.81	-0.8
1,079,326	+		MMP_RS05620	0.81	+0.1
1,079,327	-		MMP_RS05620	0.81	-0.8
1,079,328	+		MMP_RS05620	0.82	+1.1
1,079,328	+		MMP_RS05620	0.82	+2.0
1,079,328	+		MMP_RS05620	0.82	+0.2
1,079,328	+		MMP_RS05620	0.82	+0.8
1,079,399	-		MMP_RS05620	0.88	-0.2
1,079,412	-		MMP_RS05620	0.90	-4.9
1,079,413	+		MMP_RS05620	0.90	-0.8
1,079,423	+				-0.5
1,079,423	+				+0.1
1,079,423	+				-0.1
1,079,428	+				-3.4
1,079,444	-				-3.3
1,079,444	-				-1.3
1,079,445	+				-0.2
1,079,520	-				-1.4
1,079,520	-				+0.3
1,079,521	+				+0.5
1,079,521	+				-1.9
1,079,523	-				+1.5
1,079,524	+				+0.1
1,079,533	-				-3.1
1,079,534	+				-4.5
1,079,534	+				-1.8
1,079,536	-				+1.1
1,079,537	+				+0.2
1,079,537	+				+0.2
1,079,545	-				-0.3
1,079,571	+				+0.4
1,079,571	+				+0.5
1,079,585	-				-0.8
1,079,585	-				-4.6
1,079,586	+				+0.6
1,079,589	+				-1.1
1,079,591	+				-3.9
1,079,591	+				+1.7
1,079,591	+				+1.0
1,079,599	+				+0.0
1,079,599	+				-1.0
1,079,653	+				-0.9
1,079,653	+				-0.6
1,079,653	+				+0.1
1,079,749	+		MMP_RS05625	0.11	-0.0
1,079,755	-		MMP_RS05625	0.11	-4.3
1,079,818	-		MMP_RS05625	0.16	-2.5
1,079,827	-		MMP_RS05625	0.17	+0.4
1,079,828	-		MMP_RS05625	0.17	-3.7
1,079,843	-		MMP_RS05625	0.18	+0.3
1,079,850	+		MMP_RS05625	0.19	-1.5
1,079,930	-		MMP_RS05625	0.26	+0.2
1,079,930	-		MMP_RS05625	0.26	-0.2
1,079,931	+		MMP_RS05625	0.26	-0.8
1,079,933	+		MMP_RS05625	0.26	-4.4
1,079,950	+		MMP_RS05625	0.27	+2.3
1,079,953	-		MMP_RS05625	0.28	-1.8
1,079,953	-		MMP_RS05625	0.28	-1.2
1,079,953	-		MMP_RS05625	0.28	-1.7
1,079,979	-		MMP_RS05625	0.30	+0.2
1,079,980	+		MMP_RS05625	0.30	-3.8
1,079,996	+		MMP_RS05625	0.31	-0.5
1,079,996	+		MMP_RS05625	0.31	-2.8
1,080,027	-		MMP_RS05625	0.34	-0.8
1,080,087	-		MMP_RS05625	0.39	+0.7
1,080,101	+		MMP_RS05625	0.40	-0.5
1,080,141	-		MMP_RS05625	0.43	-5.7
1,080,280	+		MMP_RS05625	0.55	+0.1
1,080,303	-		MMP_RS05625	0.57	-2.3
1,080,303	-		MMP_RS05625	0.57	-1.1
1,080,306	-		MMP_RS05625	0.57	-4.4
1,080,309	-		MMP_RS05625	0.57	+0.6
1,080,309	-		MMP_RS05625	0.57	-0.9
1,080,309	-		MMP_RS05625	0.57	-0.6
1,080,310	+		MMP_RS05625	0.57	+0.5
1,080,310	+		MMP_RS05625	0.57	+0.1
1,080,325	+		MMP_RS05625	0.59	-1.0
1,080,345	-		MMP_RS05625	0.60	-3.8
1,080,346	+		MMP_RS05625	0.60	-0.1
1,080,350	+		MMP_RS05625	0.61	-3.4
1,080,351	-		MMP_RS05625	0.61	-0.3
1,080,351	-		MMP_RS05625	0.61	+4.6
1,080,352	+		MMP_RS05625	0.61	-0.4
1,080,352	+		MMP_RS05625	0.61	-1.1
1,080,356	+		MMP_RS05625	0.61	-2.2
1,080,372	-		MMP_RS05625	0.62	-1.3
1,080,399	-		MMP_RS05625	0.65	+0.6
1,080,399	-		MMP_RS05625	0.65	-1.5
1,080,399	-		MMP_RS05625	0.65	-0.2
1,080,400	+		MMP_RS05625	0.65	+0.5
1,080,401	-		MMP_RS05625	0.65	+0.2
1,080,401	-		MMP_RS05625	0.65	-0.1
1,080,402	+		MMP_RS05625	0.65	-0.8
1,080,405	-		MMP_RS05625	0.65	-1.1
1,080,409	+		MMP_RS05625	0.66	-1.2
1,080,438	-		MMP_RS05625	0.68	-1.2
1,080,475	-		MMP_RS05625	0.71	-0.3
1,080,552	+		MMP_RS05625	0.77	-0.6
1,080,588	-		MMP_RS05625	0.80	+0.3
1,080,589	+		MMP_RS05625	0.80	-5.2
1,080,589	+		MMP_RS05625	0.80	-2.6
1,080,616	-		MMP_RS05625	0.83	-0.7
1,080,616	-		MMP_RS05625	0.83	-0.2
1,080,617	+		MMP_RS05625	0.83	-4.2
1,080,621	-		MMP_RS05625	0.83	+1.1
1,080,622	+		MMP_RS05625	0.83	-1.1
1,080,622	+		MMP_RS05625	0.83	-0.4
1,080,663	-		MMP_RS05625	0.87	-5.7
1,080,667	+		MMP_RS05625	0.87	-2.1
1,080,668	-		MMP_RS05625	0.87	-4.7
1,080,670	-		MMP_RS05625	0.87	-0.7
1,080,671	+		MMP_RS05625	0.87	+0.5
1,080,691	-		MMP_RS05625	0.89	-4.6
1,080,692	+		MMP_RS05625	0.89	-1.7
1,080,692	+		MMP_RS05625	0.89	-1.4
1,080,692	+		MMP_RS05625	0.89	-0.8
1,080,692	+		MMP_RS05625	0.89	-3.3
1,080,692	+		MMP_RS05625	0.89	-5.1
1,080,693	-		MMP_RS05625	0.89	-3.0
1,080,693	-		MMP_RS05625	0.89	-0.1
1,080,694	+		MMP_RS05625	0.89	-5.2
1,080,694	+		MMP_RS05625	0.89	+0.4
1,080,694	+		MMP_RS05625	0.89	-1.7
1,080,694	+		MMP_RS05625	0.89	+1.6
1,080,705	-				-1.8
1,080,751	-				-1.7
1,080,756	+				+0.2
1,080,770	+				-1.3
1,080,804	-				-4.0
1,080,804	-				+1.0
1,080,804	-				-1.7
1,080,804	-				+3.8
1,080,805	+				+0.4
1,080,805	+				-0.5
1,080,805	+				+1.2
1,080,805	+				-4.6
1,080,806	-				-0.9
1,080,806	-				-4.7
1,080,806	-				-0.6
1,080,806	-				+0.6
1,080,807	+				-1.3
1,080,807	+				-0.9
1,080,807	+				-0.4
1,080,807	+				-3.4
1,080,807	+				+0.4
1,080,808	-				-3.9
1,080,808	-				+0.4
1,080,809	+				-1.6
1,080,809	+				+0.4
1,080,809	+				+0.3
1,080,858	-				-0.8
1,080,858	-				-0.1
1,080,859	+				-0.1
1,080,860	-				+0.9
1,080,864	+				+0.5
1,080,876	-				+0.9
1,080,877	+				+1.1
1,080,901	-				-0.1
1,080,908	+				-1.4
1,080,913	+				+0.3
1,080,959	+				+0.1
1,080,959	+				+1.4
1,080,979	-				-0.6
1,080,985	+				+1.0
1,081,001	-				+0.9
1,081,031	+				+0.6
1,081,106	+				-2.8
1,081,106	+				-0.2
1,081,109	-				-2.8
1,081,109	-				-3.6
1,081,109	-				-2.2
1,081,138	-				-3.1
1,081,139	+				-1.9
1,081,139	+				-2.9
1,081,141	-				-2.7
1,081,142	+				-3.3
1,081,254	-				-2.7
1,081,254	-				-3.6
1,081,266	-				-2.2
1,081,266	-				-3.2
1,081,313	+				-3.1
1,081,333	-				-3.6
1,081,631	+				-2.4
1,081,663	-				-2.5