Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03725 and MMP_RS03730 are separated by 85 nucleotides MMP_RS03730 and MMP_RS03735 are separated by 431 nucleotides
MMP_RS03725: MMP_RS03725 - magnesium/cobalt transporter CorA, at 703,930 to 704,988
_RS03725
MMP_RS03730: MMP_RS03730 - ABC transporter substrate-binding protein, at 705,074 to 705,820
_RS03730
MMP_RS03735: MMP_RS03735 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 706,252 to 707,988
_RS03735
Position (kb) 705
706 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 704.202 kb on + strand, within MMP_RS03725 at 704.202 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.252 kb on + strand, within MMP_RS03725 at 704.252 kb on + strand, within MMP_RS03725 at 704.292 kb on + strand, within MMP_RS03725 at 704.364 kb on + strand, within MMP_RS03725 at 704.364 kb on + strand, within MMP_RS03725 at 704.412 kb on - strand, within MMP_RS03725 at 704.434 kb on - strand, within MMP_RS03725 at 704.434 kb on - strand, within MMP_RS03725 at 704.516 kb on + strand, within MMP_RS03725 at 704.632 kb on + strand, within MMP_RS03725 at 704.681 kb on + strand, within MMP_RS03725 at 704.696 kb on + strand, within MMP_RS03725 at 704.715 kb on + strand, within MMP_RS03725 at 704.791 kb on + strand, within MMP_RS03725 at 704.863 kb on - strand, within MMP_RS03725 at 704.942 kb on - strand at 704.986 kb on - strand at 704.999 kb on + strand at 705.017 kb on - strand at 705.041 kb on + strand at 705.041 kb on + strand at 705.046 kb on + strand at 705.048 kb on - strand at 705.051 kb on + strand at 705.099 kb on - strand at 705.177 kb on - strand, within MMP_RS03730 at 705.178 kb on + strand, within MMP_RS03730 at 705.178 kb on + strand, within MMP_RS03730 at 705.179 kb on - strand, within MMP_RS03730 at 705.179 kb on - strand, within MMP_RS03730 at 705.180 kb on + strand, within MMP_RS03730 at 705.185 kb on - strand, within MMP_RS03730 at 705.185 kb on - strand, within MMP_RS03730 at 705.185 kb on - strand, within MMP_RS03730 at 705.185 kb on - strand, within MMP_RS03730 at 705.237 kb on - strand, within MMP_RS03730 at 705.237 kb on - strand, within MMP_RS03730 at 705.272 kb on + strand, within MMP_RS03730 at 705.306 kb on + strand, within MMP_RS03730 at 705.315 kb on + strand, within MMP_RS03730 at 705.407 kb on - strand, within MMP_RS03730 at 705.419 kb on - strand, within MMP_RS03730 at 705.420 kb on + strand, within MMP_RS03730 at 705.560 kb on - strand, within MMP_RS03730 at 705.565 kb on - strand, within MMP_RS03730 at 705.626 kb on - strand, within MMP_RS03730 at 705.642 kb on + strand, within MMP_RS03730 at 705.642 kb on + strand, within MMP_RS03730 at 705.682 kb on - strand, within MMP_RS03730 at 705.689 kb on + strand, within MMP_RS03730 at 705.732 kb on - strand, within MMP_RS03730 at 705.739 kb on - strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.763 kb on - strand at 705.763 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.768 kb on + strand at 705.768 kb on + strand at 705.798 kb on - strand at 705.876 kb on - strand at 705.876 kb on - strand at 705.876 kb on - strand at 705.877 kb on + strand at 705.881 kb on + strand at 705.881 kb on + strand at 705.886 kb on - strand at 705.907 kb on + strand at 705.910 kb on + strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.913 kb on - strand at 706.009 kb on - strand at 706.011 kb on - strand at 706.013 kb on - strand at 706.016 kb on + strand at 706.068 kb on - strand at 706.113 kb on - strand at 706.114 kb on + strand at 706.119 kb on - strand at 706.120 kb on + strand at 706.120 kb on + strand at 706.138 kb on + strand at 706.138 kb on + strand at 706.171 kb on - strand at 706.172 kb on + strand at 706.173 kb on - strand at 706.531 kb on + strand, within MMP_RS03735 at 706.728 kb on - strand, within MMP_RS03735 at 706.788 kb on + strand, within MMP_RS03735
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations remove 704,202 + MMP_RS03725 0.26 -0.4 704,202 + MMP_RS03725 0.26 +0.8 704,248 + MMP_RS03725 0.30 -0.2 704,248 + MMP_RS03725 0.30 -0.4 704,248 + MMP_RS03725 0.30 -0.4 704,248 + MMP_RS03725 0.30 +0.6 704,248 + MMP_RS03725 0.30 +1.2 704,252 + MMP_RS03725 0.30 +0.5 704,252 + MMP_RS03725 0.30 +0.2 704,292 + MMP_RS03725 0.34 +2.4 704,364 + MMP_RS03725 0.41 -0.8 704,364 + MMP_RS03725 0.41 +0.6 704,412 - MMP_RS03725 0.46 +1.4 704,434 - MMP_RS03725 0.48 -0.1 704,434 - MMP_RS03725 0.48 -0.7 704,516 + MMP_RS03725 0.55 -1.2 704,632 + MMP_RS03725 0.66 +3.2 704,681 + MMP_RS03725 0.71 -0.2 704,696 + MMP_RS03725 0.72 +1.4 704,715 + MMP_RS03725 0.74 -0.1 704,791 + MMP_RS03725 0.81 +0.8 704,863 - MMP_RS03725 0.88 +0.4 704,942 - +2.0 704,986 - -2.1 704,999 + -0.0 705,017 - +1.3 705,041 + +0.9 705,041 + -0.2 705,046 + +0.4 705,048 - -4.8 705,051 + +1.9 705,099 - -0.7 705,177 - MMP_RS03730 0.14 -0.1 705,178 + MMP_RS03730 0.14 +1.2 705,178 + MMP_RS03730 0.14 -1.2 705,179 - MMP_RS03730 0.14 +0.5 705,179 - MMP_RS03730 0.14 +0.7 705,180 + MMP_RS03730 0.14 -0.4 705,185 - MMP_RS03730 0.15 -0.6 705,185 - MMP_RS03730 0.15 -0.3 705,185 - MMP_RS03730 0.15 -0.6 705,185 - MMP_RS03730 0.15 -1.4 705,237 - MMP_RS03730 0.22 -4.4 705,237 - MMP_RS03730 0.22 -0.1 705,272 + MMP_RS03730 0.27 -1.0 705,306 + MMP_RS03730 0.31 +0.7 705,315 + MMP_RS03730 0.32 +1.4 705,407 - MMP_RS03730 0.45 -5.9 705,419 - MMP_RS03730 0.46 +0.4 705,420 + MMP_RS03730 0.46 -0.2 705,560 - MMP_RS03730 0.65 -0.1 705,565 - MMP_RS03730 0.66 +0.4 705,626 - MMP_RS03730 0.74 -1.3 705,642 + MMP_RS03730 0.76 -0.2 705,642 + MMP_RS03730 0.76 -0.7 705,682 - MMP_RS03730 0.81 -1.3 705,689 + MMP_RS03730 0.82 +0.3 705,732 - MMP_RS03730 0.88 +0.6 705,739 - MMP_RS03730 0.89 -0.9 705,745 + MMP_RS03730 0.90 -0.0 705,745 + MMP_RS03730 0.90 -5.4 705,745 + MMP_RS03730 0.90 +1.4 705,745 + MMP_RS03730 0.90 +0.6 705,745 + MMP_RS03730 0.90 +0.1 705,745 + MMP_RS03730 0.90 +0.7 705,763 - +1.3 705,763 - +0.2 705,767 - +0.7 705,767 - -0.4 705,767 - -0.2 705,767 - +0.3 705,767 - -0.8 705,768 + -1.0 705,768 + +0.1 705,798 - +0.4 705,876 - +0.5 705,876 - +0.6 705,876 - +4.0 705,877 + +0.8 705,881 + +1.7 705,881 + +0.1 705,886 - -0.4 705,907 + -1.2 705,910 + +0.5 705,911 - +0.6 705,911 - +0.2 705,911 - -0.4 705,912 + -0.2 705,912 + +0.5 705,912 + +1.1 705,913 - +0.8 706,009 - +0.2 706,011 - +0.1 706,013 - -0.9 706,016 + +0.9 706,068 - -0.5 706,113 - +0.2 706,114 + +0.0 706,119 - +0.4 706,120 + +0.8 706,120 + +1.5 706,138 + +3.0 706,138 + +0.9 706,171 - +1.3 706,172 + +1.0 706,173 - -0.1 706,531 + MMP_RS03735 0.16 -0.6 706,728 - MMP_RS03735 0.27 -0.0 706,788 + MMP_RS03735 0.31 -0.0
Or see this region's nucleotide sequence