Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00490

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00485 and MMP_RS00490 overlap by 1 nucleotidesMMP_RS00490 and MMP_RS00495 are separated by 134 nucleotides MMP_RS00485: MMP_RS00485 - mRNA surveillance protein pelota, at 96,131 to 97,177 _RS00485 MMP_RS00490: MMP_RS00490 - Tfx family DNA-binding protein, at 97,177 to 97,626 _RS00490 MMP_RS00495: MMP_RS00495 - hydroxymethylglutaryl-CoA reductase (NADPH), at 97,761 to 98,987 _RS00495 Position (kb) 97 98Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 96.534 kb on - strandat 96.940 kb on - strandat 97.091 kb on - strandat 97.092 kb on + strandat 97.279 kb on - strandat 97.351 kb on - strandat 97.357 kb on - strandat 97.401 kb on - strandat 97.406 kb on + strandat 97.419 kb on - strandat 97.424 kb on + strandat 97.435 kb on + strandat 97.457 kb on - strandat 97.458 kb on + strandat 97.461 kb on - strandat 97.530 kb on - strandat 97.546 kb on + strandat 97.626 kb on - strandat 97.654 kb on - strandat 97.654 kb on - strandat 97.655 kb on + strandat 97.655 kb on + strandat 97.656 kb on - strandat 97.656 kb on - strandat 97.656 kb on - strandat 97.677 kb on - strandat 97.678 kb on + strandat 97.682 kb on - strandat 98.085 kb on + strandat 98.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
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96,534 - -2.5
96,940 - -2.2
97,091 - -2.0
97,092 + -2.0
97,279 - -3.6
97,351 - -3.7
97,357 - -3.6
97,401 - -3.8
97,406 + -2.8
97,419 - -4.2
97,424 + -3.6
97,435 + -3.0
97,457 - -5.9
97,458 + -3.1
97,461 - -4.0
97,530 - -3.1
97,546 + -4.5
97,626 - -2.6
97,654 - -3.4
97,654 - -3.2
97,655 + -3.4
97,655 + -4.0
97,656 - -5.0
97,656 - -3.3
97,656 - -1.9
97,677 - -3.9
97,678 + -5.3
97,682 - +0.3
98,085 + -2.9
98,470 + -2.8

Or see this region's nucleotide sequence