Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00040 and MMP_RS00045 are separated by 36 nucleotides MMP_RS00045 and MMP_RS00050 are separated by 38 nucleotides
MMP_RS00040: MMP_RS00040 - TIGR03576 family pyridoxal phosphate-dependent enzyme, at 10,416 to 11,480
_RS00040
MMP_RS00045: MMP_RS00045 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 11,517 to 12,608
_RS00045
MMP_RS00050: MMP_RS00050 - AarF/UbiB family protein, at 12,647 to 13,543
_RS00050
Position (kb) 11
12
13 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 10.569 kb on - strand, within MMP_RS00040 at 10.569 kb on - strand, within MMP_RS00040 at 10.569 kb on - strand, within MMP_RS00040 at 10.604 kb on - strand, within MMP_RS00040 at 10.605 kb on + strand, within MMP_RS00040 at 10.625 kb on + strand, within MMP_RS00040 at 10.681 kb on - strand, within MMP_RS00040 at 10.731 kb on - strand, within MMP_RS00040 at 11.105 kb on + strand, within MMP_RS00040 at 11.197 kb on - strand, within MMP_RS00040 at 11.286 kb on + strand, within MMP_RS00040 at 11.315 kb on + strand, within MMP_RS00040 at 11.330 kb on + strand, within MMP_RS00040 at 11.354 kb on + strand, within MMP_RS00040 at 11.450 kb on + strand at 11.452 kb on - strand at 11.464 kb on - strand at 11.523 kb on - strand at 11.533 kb on + strand at 11.671 kb on + strand at 11.714 kb on + strand at 11.825 kb on + strand at 12.653 kb on + strand at 12.665 kb on - strand at 12.668 kb on + strand at 12.681 kb on - strand at 12.682 kb on + strand at 12.685 kb on - strand at 12.686 kb on + strand at 12.689 kb on - strand at 12.689 kb on - strand at 12.690 kb on + strand at 12.690 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.699 kb on + strand at 12.729 kb on - strand at 12.758 kb on - strand, within MMP_RS00050 at 12.777 kb on - strand, within MMP_RS00050 at 12.782 kb on - strand, within MMP_RS00050 at 12.782 kb on - strand, within MMP_RS00050 at 12.882 kb on + strand, within MMP_RS00050 at 12.924 kb on - strand, within MMP_RS00050 at 13.004 kb on - strand, within MMP_RS00050 at 13.073 kb on - strand, within MMP_RS00050 at 13.145 kb on + strand, within MMP_RS00050 at 13.168 kb on + strand, within MMP_RS00050 at 13.247 kb on + strand, within MMP_RS00050 at 13.324 kb on - strand, within MMP_RS00050 at 13.431 kb on + strand, within MMP_RS00050 at 13.595 kb on + strand at 13.598 kb on + strand at 13.598 kb on + strand at 13.608 kb on - strand at 13.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 20 generations remove 10,569 - MMP_RS00040 0.14 +2.3 10,569 - MMP_RS00040 0.14 +1.1 10,569 - MMP_RS00040 0.14 +2.1 10,604 - MMP_RS00040 0.18 +1.2 10,605 + MMP_RS00040 0.18 +1.6 10,625 + MMP_RS00040 0.20 +3.4 10,681 - MMP_RS00040 0.25 +1.9 10,731 - MMP_RS00040 0.30 +0.4 11,105 + MMP_RS00040 0.65 +1.8 11,197 - MMP_RS00040 0.73 +1.9 11,286 + MMP_RS00040 0.82 -0.4 11,315 + MMP_RS00040 0.84 +0.7 11,330 + MMP_RS00040 0.86 -2.4 11,354 + MMP_RS00040 0.88 +0.6 11,450 + +2.4 11,452 - -1.1 11,464 - +1.4 11,523 - +1.7 11,533 + +0.9 11,671 + -2.3 11,714 + -2.2 11,825 + -2.2 12,653 + -1.5 12,665 - -3.4 12,668 + -1.7 12,681 - -1.9 12,682 + -3.6 12,685 - -2.6 12,686 + -2.5 12,689 - -3.8 12,689 - -3.5 12,690 + -2.0 12,690 + -3.5 12,695 + -3.7 12,695 + -3.6 12,695 + -3.8 12,695 + -3.5 12,695 + -3.0 12,695 + -2.3 12,699 + -0.7 12,729 - -2.5 12,758 - MMP_RS00050 0.12 -3.6 12,777 - MMP_RS00050 0.14 +0.5 12,782 - MMP_RS00050 0.15 -3.3 12,782 - MMP_RS00050 0.15 +0.4 12,882 + MMP_RS00050 0.26 -2.7 12,924 - MMP_RS00050 0.31 -5.0 13,004 - MMP_RS00050 0.40 -4.4 13,073 - MMP_RS00050 0.47 -0.3 13,145 + MMP_RS00050 0.56 -2.6 13,168 + MMP_RS00050 0.58 -0.9 13,247 + MMP_RS00050 0.67 -4.4 13,324 - MMP_RS00050 0.75 +1.0 13,431 + MMP_RS00050 0.87 -0.2 13,595 + +1.4 13,598 + -4.5 13,598 + +0.1 13,608 - -0.1 13,608 - -3.0
Or see this region's nucleotide sequence