Experiment: D-Maltose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10090 and HMPREF1058_RS10085 are separated by 97 nucleotides HMPREF1058_RS10085 and HMPREF1058_RS10080 are separated by 528 nucleotides HMPREF1058_RS10080 and HMPREF1058_RS10075 are separated by 23 nucleotides
HMPREF1058_RS10090: HMPREF1058_RS10090 - phage integrase SAM-like domain-containing protein, at 723,597 to 724,940
_RS10090
HMPREF1058_RS10085: HMPREF1058_RS10085 - tRNA-Arg, at 725,038 to 725,109
_RS10085
HMPREF1058_RS10080: HMPREF1058_RS10080 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 725,638 to 727,485
_RS10080
HMPREF1058_RS10075: HMPREF1058_RS10075 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 727,509 to 728,513
_RS10075
Position (kb) 725
726
727
728 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 724.664 kb on + strand, within HMPREF1058_RS10090 at 724.698 kb on - strand, within HMPREF1058_RS10090 at 724.746 kb on + strand, within HMPREF1058_RS10090 at 724.767 kb on + strand, within HMPREF1058_RS10090 at 724.768 kb on - strand, within HMPREF1058_RS10090 at 724.808 kb on + strand at 724.817 kb on + strand at 724.819 kb on + strand at 724.820 kb on - strand at 724.822 kb on - strand at 724.867 kb on - strand at 724.877 kb on + strand at 724.880 kb on + strand at 724.885 kb on + strand at 724.885 kb on + strand at 724.886 kb on - strand at 724.940 kb on + strand at 724.961 kb on - strand at 724.967 kb on - strand at 724.967 kb on - strand at 724.967 kb on - strand at 725.062 kb on + strand, within HMPREF1058_RS10085 at 725.202 kb on + strand at 725.271 kb on - strand at 725.293 kb on - strand at 725.457 kb on + strand at 725.485 kb on + strand at 725.486 kb on - strand at 725.517 kb on - strand at 725.552 kb on + strand at 725.632 kb on + strand at 725.736 kb on + strand at 725.736 kb on + strand at 725.769 kb on + strand at 725.770 kb on - strand at 725.795 kb on + strand at 725.796 kb on - strand at 725.952 kb on + strand, within HMPREF1058_RS10080 at 725.952 kb on + strand, within HMPREF1058_RS10080 at 725.952 kb on + strand, within HMPREF1058_RS10080 at 725.965 kb on - strand, within HMPREF1058_RS10080 at 726.050 kb on + strand, within HMPREF1058_RS10080 at 726.050 kb on + strand, within HMPREF1058_RS10080 at 726.097 kb on - strand, within HMPREF1058_RS10080 at 726.136 kb on - strand, within HMPREF1058_RS10080 at 726.283 kb on - strand, within HMPREF1058_RS10080 at 726.307 kb on + strand, within HMPREF1058_RS10080 at 726.307 kb on + strand, within HMPREF1058_RS10080 at 726.307 kb on + strand, within HMPREF1058_RS10080 at 726.308 kb on - strand, within HMPREF1058_RS10080 at 726.309 kb on + strand, within HMPREF1058_RS10080 at 726.309 kb on + strand, within HMPREF1058_RS10080 at 726.327 kb on + strand, within HMPREF1058_RS10080 at 726.332 kb on - strand, within HMPREF1058_RS10080 at 726.333 kb on - strand, within HMPREF1058_RS10080 at 726.344 kb on - strand, within HMPREF1058_RS10080 at 726.384 kb on - strand, within HMPREF1058_RS10080 at 726.478 kb on - strand, within HMPREF1058_RS10080 at 726.478 kb on - strand, within HMPREF1058_RS10080 at 726.576 kb on + strand, within HMPREF1058_RS10080 at 726.638 kb on + strand, within HMPREF1058_RS10080 at 726.638 kb on + strand, within HMPREF1058_RS10080 at 726.639 kb on - strand, within HMPREF1058_RS10080 at 726.652 kb on - strand, within HMPREF1058_RS10080 at 726.659 kb on + strand, within HMPREF1058_RS10080 at 726.659 kb on + strand, within HMPREF1058_RS10080 at 726.799 kb on + strand, within HMPREF1058_RS10080 at 726.800 kb on - strand, within HMPREF1058_RS10080 at 726.810 kb on + strand, within HMPREF1058_RS10080 at 726.810 kb on + strand, within HMPREF1058_RS10080 at 726.811 kb on - strand, within HMPREF1058_RS10080 at 726.928 kb on + strand, within HMPREF1058_RS10080 at 726.928 kb on + strand, within HMPREF1058_RS10080 at 726.929 kb on - strand, within HMPREF1058_RS10080 at 726.929 kb on - strand, within HMPREF1058_RS10080 at 726.952 kb on - strand, within HMPREF1058_RS10080 at 726.952 kb on - strand, within HMPREF1058_RS10080 at 727.024 kb on - strand, within HMPREF1058_RS10080 at 727.030 kb on - strand, within HMPREF1058_RS10080 at 727.068 kb on + strand, within HMPREF1058_RS10080 at 727.069 kb on - strand, within HMPREF1058_RS10080 at 727.093 kb on - strand, within HMPREF1058_RS10080 at 727.207 kb on + strand, within HMPREF1058_RS10080 at 727.207 kb on + strand, within HMPREF1058_RS10080 at 727.208 kb on - strand, within HMPREF1058_RS10080 at 727.217 kb on + strand, within HMPREF1058_RS10080 at 727.218 kb on - strand, within HMPREF1058_RS10080 at 727.220 kb on - strand, within HMPREF1058_RS10080 at 727.302 kb on + strand at 727.326 kb on + strand at 727.439 kb on + strand at 727.480 kb on - strand at 727.519 kb on - strand at 727.677 kb on + strand, within HMPREF1058_RS10075 at 727.680 kb on + strand, within HMPREF1058_RS10075 at 727.681 kb on - strand, within HMPREF1058_RS10075 at 727.688 kb on + strand, within HMPREF1058_RS10075 at 727.688 kb on + strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.693 kb on - strand, within HMPREF1058_RS10075 at 727.728 kb on - strand, within HMPREF1058_RS10075 at 727.763 kb on + strand, within HMPREF1058_RS10075 at 727.900 kb on - strand, within HMPREF1058_RS10075 at 727.928 kb on + strand, within HMPREF1058_RS10075 at 728.072 kb on + strand, within HMPREF1058_RS10075 at 728.073 kb on - strand, within HMPREF1058_RS10075 at 728.086 kb on + strand, within HMPREF1058_RS10075 at 728.140 kb on + strand, within HMPREF1058_RS10075 at 728.141 kb on - strand, within HMPREF1058_RS10075 at 728.143 kb on - strand, within HMPREF1058_RS10075 at 728.144 kb on + strand, within HMPREF1058_RS10075 at 728.144 kb on + strand, within HMPREF1058_RS10075 at 728.145 kb on - strand, within HMPREF1058_RS10075 at 728.176 kb on - strand, within HMPREF1058_RS10075 at 728.210 kb on - strand, within HMPREF1058_RS10075 at 728.296 kb on + strand, within HMPREF1058_RS10075 at 728.409 kb on + strand, within HMPREF1058_RS10075
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 20 mM (C) remove 724,664 + HMPREF1058_RS10090 0.79 -0.7 724,698 - HMPREF1058_RS10090 0.82 -0.1 724,746 + HMPREF1058_RS10090 0.85 +0.3 724,767 + HMPREF1058_RS10090 0.87 -0.2 724,768 - HMPREF1058_RS10090 0.87 -1.0 724,808 + -0.2 724,817 + -0.3 724,819 + +0.5 724,820 - -0.8 724,822 - +0.5 724,867 - -0.5 724,877 + +0.2 724,880 + -0.6 724,885 + -0.0 724,885 + -0.7 724,886 - -0.9 724,940 + +1.6 724,961 - -1.7 724,967 - -0.8 724,967 - -1.3 724,967 - -0.4 725,062 + HMPREF1058_RS10085 0.33 -1.5 725,202 + -1.0 725,271 - -1.7 725,293 - -0.7 725,457 + +1.3 725,485 + -0.7 725,486 - -3.2 725,517 - -0.3 725,552 + -1.0 725,632 + -3.5 725,736 + -5.1 725,736 + -5.3 725,769 + -5.3 725,770 - -6.1 725,795 + -5.1 725,796 - -4.4 725,952 + HMPREF1058_RS10080 0.17 -4.4 725,952 + HMPREF1058_RS10080 0.17 -1.2 725,952 + HMPREF1058_RS10080 0.17 -1.7 725,965 - HMPREF1058_RS10080 0.18 -5.7 726,050 + HMPREF1058_RS10080 0.22 -1.4 726,050 + HMPREF1058_RS10080 0.22 -4.8 726,097 - HMPREF1058_RS10080 0.25 -3.2 726,136 - HMPREF1058_RS10080 0.27 -4.2 726,283 - HMPREF1058_RS10080 0.35 -2.9 726,307 + HMPREF1058_RS10080 0.36 -5.7 726,307 + HMPREF1058_RS10080 0.36 -3.3 726,307 + HMPREF1058_RS10080 0.36 -3.6 726,308 - HMPREF1058_RS10080 0.36 -1.0 726,309 + HMPREF1058_RS10080 0.36 -4.5 726,309 + HMPREF1058_RS10080 0.36 -3.1 726,327 + HMPREF1058_RS10080 0.37 -3.4 726,332 - HMPREF1058_RS10080 0.38 -4.5 726,333 - HMPREF1058_RS10080 0.38 -1.4 726,344 - HMPREF1058_RS10080 0.38 -4.6 726,384 - HMPREF1058_RS10080 0.40 -4.7 726,478 - HMPREF1058_RS10080 0.45 -3.0 726,478 - HMPREF1058_RS10080 0.45 -4.5 726,576 + HMPREF1058_RS10080 0.51 -5.0 726,638 + HMPREF1058_RS10080 0.54 -3.2 726,638 + HMPREF1058_RS10080 0.54 -3.3 726,639 - HMPREF1058_RS10080 0.54 -6.2 726,652 - HMPREF1058_RS10080 0.55 -3.0 726,659 + HMPREF1058_RS10080 0.55 -5.1 726,659 + HMPREF1058_RS10080 0.55 -5.8 726,799 + HMPREF1058_RS10080 0.63 -3.2 726,800 - HMPREF1058_RS10080 0.63 -2.6 726,810 + HMPREF1058_RS10080 0.63 -3.7 726,810 + HMPREF1058_RS10080 0.63 -4.1 726,811 - HMPREF1058_RS10080 0.63 -4.1 726,928 + HMPREF1058_RS10080 0.70 -2.1 726,928 + HMPREF1058_RS10080 0.70 -4.6 726,929 - HMPREF1058_RS10080 0.70 -2.0 726,929 - HMPREF1058_RS10080 0.70 -4.8 726,952 - HMPREF1058_RS10080 0.71 -2.7 726,952 - HMPREF1058_RS10080 0.71 -4.2 727,024 - HMPREF1058_RS10080 0.75 -3.2 727,030 - HMPREF1058_RS10080 0.75 -3.9 727,068 + HMPREF1058_RS10080 0.77 -3.0 727,069 - HMPREF1058_RS10080 0.77 -4.3 727,093 - HMPREF1058_RS10080 0.79 -4.9 727,207 + HMPREF1058_RS10080 0.85 -6.0 727,207 + HMPREF1058_RS10080 0.85 -6.3 727,208 - HMPREF1058_RS10080 0.85 -5.0 727,217 + HMPREF1058_RS10080 0.85 -3.2 727,218 - HMPREF1058_RS10080 0.85 -3.9 727,220 - HMPREF1058_RS10080 0.86 -5.0 727,302 + -4.8 727,326 + -4.4 727,439 + -5.1 727,480 - -1.8 727,519 - -2.4 727,677 + HMPREF1058_RS10075 0.17 -5.9 727,680 + HMPREF1058_RS10075 0.17 -3.2 727,681 - HMPREF1058_RS10075 0.17 -4.8 727,688 + HMPREF1058_RS10075 0.18 -3.2 727,688 + HMPREF1058_RS10075 0.18 -5.0 727,689 - HMPREF1058_RS10075 0.18 -1.7 727,689 - HMPREF1058_RS10075 0.18 -4.4 727,689 - HMPREF1058_RS10075 0.18 -4.4 727,693 - HMPREF1058_RS10075 0.18 -5.1 727,728 - HMPREF1058_RS10075 0.22 -0.7 727,763 + HMPREF1058_RS10075 0.25 -4.6 727,900 - HMPREF1058_RS10075 0.39 -2.4 727,928 + HMPREF1058_RS10075 0.42 -1.0 728,072 + HMPREF1058_RS10075 0.56 -4.1 728,073 - HMPREF1058_RS10075 0.56 -5.2 728,086 + HMPREF1058_RS10075 0.57 -6.1 728,140 + HMPREF1058_RS10075 0.63 -4.7 728,141 - HMPREF1058_RS10075 0.63 -4.7 728,143 - HMPREF1058_RS10075 0.63 -5.4 728,144 + HMPREF1058_RS10075 0.63 -5.7 728,144 + HMPREF1058_RS10075 0.63 -1.2 728,145 - HMPREF1058_RS10075 0.63 -6.0 728,176 - HMPREF1058_RS10075 0.66 -4.9 728,210 - HMPREF1058_RS10075 0.70 -6.3 728,296 + HMPREF1058_RS10075 0.78 -4.4 728,409 + HMPREF1058_RS10075 0.90 -3.0
Or see this region's nucleotide sequence