Experiment: D-Maltose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04060 and HMPREF1058_RS04055 are separated by 9 nucleotides HMPREF1058_RS04055 and HMPREF1058_RS04050 are separated by 39 nucleotides HMPREF1058_RS04050 and HMPREF1058_RS04045 are separated by 19 nucleotides HMPREF1058_RS04045 and HMPREF1058_RS04040 are separated by 10 nucleotides
HMPREF1058_RS04060: HMPREF1058_RS04060 - VWA domain-containing protein, at 124,244 to 125,266
_RS04060
HMPREF1058_RS04055: HMPREF1058_RS04055 - tetratricopeptide repeat protein, at 125,276 to 125,983
_RS04055
HMPREF1058_RS04050: HMPREF1058_RS04050 - protein BatD, at 126,023 to 127,858
_RS04050
HMPREF1058_RS04045: HMPREF1058_RS04045 - tetratricopeptide repeat protein, at 127,878 to 128,696
_RS04045
HMPREF1058_RS04040: HMPREF1058_RS04040 - phosphatase PAP2 family protein, at 128,707 to 129,414
_RS04040
Position (kb) 126
127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 125.256 kb on + strand at 125.264 kb on + strand at 125.275 kb on + strand at 125.292 kb on - strand at 125.292 kb on - strand at 125.310 kb on + strand at 125.378 kb on + strand, within HMPREF1058_RS04055 at 126.049 kb on - strand at 126.118 kb on - strand at 126.151 kb on + strand at 126.269 kb on - strand, within HMPREF1058_RS04050 at 126.292 kb on + strand, within HMPREF1058_RS04050 at 126.344 kb on - strand, within HMPREF1058_RS04050 at 126.396 kb on + strand, within HMPREF1058_RS04050 at 126.505 kb on + strand, within HMPREF1058_RS04050 at 126.529 kb on + strand, within HMPREF1058_RS04050 at 126.563 kb on + strand, within HMPREF1058_RS04050 at 126.563 kb on + strand, within HMPREF1058_RS04050 at 126.564 kb on - strand, within HMPREF1058_RS04050 at 126.574 kb on + strand, within HMPREF1058_RS04050 at 126.838 kb on + strand, within HMPREF1058_RS04050 at 126.842 kb on + strand, within HMPREF1058_RS04050 at 126.946 kb on + strand, within HMPREF1058_RS04050 at 126.963 kb on + strand, within HMPREF1058_RS04050 at 127.082 kb on + strand, within HMPREF1058_RS04050 at 127.229 kb on - strand, within HMPREF1058_RS04050 at 127.232 kb on + strand, within HMPREF1058_RS04050 at 127.232 kb on + strand, within HMPREF1058_RS04050 at 127.233 kb on - strand, within HMPREF1058_RS04050 at 127.234 kb on + strand, within HMPREF1058_RS04050 at 127.257 kb on - strand, within HMPREF1058_RS04050 at 127.418 kb on + strand, within HMPREF1058_RS04050 at 127.419 kb on - strand, within HMPREF1058_RS04050 at 127.419 kb on - strand, within HMPREF1058_RS04050 at 127.433 kb on - strand, within HMPREF1058_RS04050 at 127.598 kb on + strand, within HMPREF1058_RS04050 at 127.599 kb on - strand, within HMPREF1058_RS04050 at 127.792 kb on + strand at 127.847 kb on - strand at 127.849 kb on - strand at 127.929 kb on + strand at 127.929 kb on + strand at 128.070 kb on + strand, within HMPREF1058_RS04045 at 128.071 kb on - strand, within HMPREF1058_RS04045 at 128.078 kb on + strand, within HMPREF1058_RS04045 at 128.078 kb on + strand, within HMPREF1058_RS04045 at 128.133 kb on + strand, within HMPREF1058_RS04045 at 128.172 kb on + strand, within HMPREF1058_RS04045 at 128.257 kb on + strand, within HMPREF1058_RS04045 at 128.345 kb on + strand, within HMPREF1058_RS04045 at 128.354 kb on + strand, within HMPREF1058_RS04045 at 128.365 kb on + strand, within HMPREF1058_RS04045 at 128.446 kb on + strand, within HMPREF1058_RS04045 at 128.467 kb on + strand, within HMPREF1058_RS04045 at 128.498 kb on + strand, within HMPREF1058_RS04045 at 128.514 kb on - strand, within HMPREF1058_RS04045 at 128.518 kb on + strand, within HMPREF1058_RS04045 at 128.519 kb on - strand, within HMPREF1058_RS04045 at 128.573 kb on - strand, within HMPREF1058_RS04045 at 128.573 kb on - strand, within HMPREF1058_RS04045 at 128.713 kb on - strand at 128.714 kb on + strand at 128.715 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.726 kb on + strand at 128.809 kb on - strand, within HMPREF1058_RS04040 at 128.836 kb on - strand, within HMPREF1058_RS04040 at 128.843 kb on + strand, within HMPREF1058_RS04040 at 128.848 kb on - strand, within HMPREF1058_RS04040
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 20 mM (C) remove 125,256 + +0.0 125,264 + -1.4 125,275 + +0.4 125,292 - -1.2 125,292 - -2.1 125,310 + -1.5 125,378 + HMPREF1058_RS04055 0.14 -1.2 126,049 - -1.2 126,118 - -2.1 126,151 + -1.7 126,269 - HMPREF1058_RS04050 0.13 +0.1 126,292 + HMPREF1058_RS04050 0.15 -2.2 126,344 - HMPREF1058_RS04050 0.17 -1.5 126,396 + HMPREF1058_RS04050 0.20 -3.2 126,505 + HMPREF1058_RS04050 0.26 -3.5 126,529 + HMPREF1058_RS04050 0.28 -2.1 126,563 + HMPREF1058_RS04050 0.29 -1.8 126,563 + HMPREF1058_RS04050 0.29 -2.2 126,564 - HMPREF1058_RS04050 0.29 -1.5 126,574 + HMPREF1058_RS04050 0.30 -2.0 126,838 + HMPREF1058_RS04050 0.44 -2.0 126,842 + HMPREF1058_RS04050 0.45 -3.2 126,946 + HMPREF1058_RS04050 0.50 -1.7 126,963 + HMPREF1058_RS04050 0.51 -1.9 127,082 + HMPREF1058_RS04050 0.58 -3.1 127,229 - HMPREF1058_RS04050 0.66 -1.6 127,232 + HMPREF1058_RS04050 0.66 -0.7 127,232 + HMPREF1058_RS04050 0.66 -1.7 127,233 - HMPREF1058_RS04050 0.66 -0.9 127,234 + HMPREF1058_RS04050 0.66 -1.3 127,257 - HMPREF1058_RS04050 0.67 -1.9 127,418 + HMPREF1058_RS04050 0.76 -1.2 127,419 - HMPREF1058_RS04050 0.76 -2.3 127,419 - HMPREF1058_RS04050 0.76 -0.7 127,433 - HMPREF1058_RS04050 0.77 -0.5 127,598 + HMPREF1058_RS04050 0.86 -2.2 127,599 - HMPREF1058_RS04050 0.86 -0.5 127,792 + -1.5 127,847 - -1.0 127,849 - -2.6 127,929 + -1.0 127,929 + -1.6 128,070 + HMPREF1058_RS04045 0.23 -2.8 128,071 - HMPREF1058_RS04045 0.24 -3.1 128,078 + HMPREF1058_RS04045 0.24 -2.8 128,078 + HMPREF1058_RS04045 0.24 -1.7 128,133 + HMPREF1058_RS04045 0.31 -0.9 128,172 + HMPREF1058_RS04045 0.36 -1.9 128,257 + HMPREF1058_RS04045 0.46 -1.7 128,345 + HMPREF1058_RS04045 0.57 -2.3 128,354 + HMPREF1058_RS04045 0.58 -3.3 128,365 + HMPREF1058_RS04045 0.59 -0.9 128,446 + HMPREF1058_RS04045 0.69 -3.0 128,467 + HMPREF1058_RS04045 0.72 -3.0 128,498 + HMPREF1058_RS04045 0.76 -2.4 128,514 - HMPREF1058_RS04045 0.78 -3.5 128,518 + HMPREF1058_RS04045 0.78 -1.7 128,519 - HMPREF1058_RS04045 0.78 -3.1 128,573 - HMPREF1058_RS04045 0.85 -0.0 128,573 - HMPREF1058_RS04045 0.85 -0.8 128,713 - -1.5 128,714 + -0.1 128,715 - +1.4 128,723 - +0.1 128,723 - +1.3 128,723 - +0.1 128,723 - -0.1 128,726 + +0.8 128,809 - HMPREF1058_RS04040 0.14 -0.1 128,836 - HMPREF1058_RS04040 0.18 +1.2 128,843 + HMPREF1058_RS04040 0.19 +1.4 128,848 - HMPREF1058_RS04040 0.20 +0.5
Or see this region's nucleotide sequence