Strain Fitness in Rahnella sp. WP5 around EX31_RS20975

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20970 and EX31_RS20975 are separated by 65 nucleotidesEX31_RS20975 and EX31_RS20980 are separated by 10 nucleotides EX31_RS20970: EX31_RS20970 - LysR family transcriptional regulator, at 837,002 to 837,895 _RS20970 EX31_RS20975: EX31_RS20975 - glutamate-5-semialdehyde dehydrogenase, at 837,961 to 839,214 _RS20975 EX31_RS20980: EX31_RS20980 - glutamate 5-kinase, at 839,225 to 840,328 _RS20980 Position (kb) 837 838 839 840Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 836.982 kb on + strandat 837.019 kb on + strandat 837.085 kb on - strandat 837.168 kb on + strand, within EX31_RS20970at 837.168 kb on + strand, within EX31_RS20970at 837.194 kb on + strand, within EX31_RS20970at 837.194 kb on + strand, within EX31_RS20970at 837.195 kb on - strand, within EX31_RS20970at 837.195 kb on - strand, within EX31_RS20970at 837.195 kb on - strand, within EX31_RS20970at 837.195 kb on - strand, within EX31_RS20970at 837.197 kb on + strand, within EX31_RS20970at 837.197 kb on + strand, within EX31_RS20970at 837.197 kb on + strand, within EX31_RS20970at 837.198 kb on - strand, within EX31_RS20970at 837.312 kb on - strand, within EX31_RS20970at 837.448 kb on + strand, within EX31_RS20970at 837.512 kb on + strand, within EX31_RS20970at 837.553 kb on + strand, within EX31_RS20970at 837.565 kb on + strand, within EX31_RS20970at 837.566 kb on - strand, within EX31_RS20970at 837.566 kb on - strand, within EX31_RS20970at 837.623 kb on - strand, within EX31_RS20970at 837.670 kb on + strand, within EX31_RS20970at 837.702 kb on + strand, within EX31_RS20970at 837.728 kb on + strand, within EX31_RS20970at 837.814 kb on + strandat 837.814 kb on + strandat 837.815 kb on - strandat 837.815 kb on - strandat 837.863 kb on - strandat 837.963 kb on - strandat 837.974 kb on - strandat 838.001 kb on + strandat 838.001 kb on + strandat 838.001 kb on + strandat 838.001 kb on + strandat 838.001 kb on + strandat 838.002 kb on - strandat 838.018 kb on + strandat 838.122 kb on - strand, within EX31_RS20975at 838.138 kb on + strand, within EX31_RS20975at 838.138 kb on + strand, within EX31_RS20975at 838.138 kb on + strand, within EX31_RS20975at 838.139 kb on - strand, within EX31_RS20975at 838.139 kb on - strand, within EX31_RS20975at 838.139 kb on - strand, within EX31_RS20975at 838.180 kb on - strand, within EX31_RS20975at 838.208 kb on + strand, within EX31_RS20975at 838.363 kb on + strand, within EX31_RS20975at 838.368 kb on + strand, within EX31_RS20975at 838.368 kb on + strand, within EX31_RS20975at 838.456 kb on - strand, within EX31_RS20975at 838.537 kb on - strand, within EX31_RS20975at 838.637 kb on + strand, within EX31_RS20975at 838.637 kb on + strand, within EX31_RS20975at 838.637 kb on + strand, within EX31_RS20975at 838.638 kb on - strand, within EX31_RS20975at 838.638 kb on - strand, within EX31_RS20975at 838.638 kb on - strand, within EX31_RS20975at 838.638 kb on - strand, within EX31_RS20975at 838.638 kb on - strand, within EX31_RS20975at 838.638 kb on - strand, within EX31_RS20975at 838.638 kb on - strand, within EX31_RS20975at 838.638 kb on - strand, within EX31_RS20975at 839.088 kb on + strand, within EX31_RS20975at 839.088 kb on + strand, within EX31_RS20975at 839.089 kb on - strandat 839.089 kb on - strandat 839.089 kb on - strandat 839.208 kb on + strandat 839.226 kb on + strandat 839.227 kb on - strandat 839.227 kb on - strandat 839.275 kb on - strandat 839.338 kb on + strand, within EX31_RS20980at 839.339 kb on - strand, within EX31_RS20980at 839.339 kb on - strand, within EX31_RS20980at 839.339 kb on - strand, within EX31_RS20980at 839.340 kb on + strand, within EX31_RS20980at 839.340 kb on + strand, within EX31_RS20980at 839.341 kb on - strand, within EX31_RS20980at 839.341 kb on - strand, within EX31_RS20980at 839.632 kb on + strand, within EX31_RS20980at 839.857 kb on + strand, within EX31_RS20980at 839.944 kb on + strand, within EX31_RS20980at 839.944 kb on + strand, within EX31_RS20980at 840.048 kb on + strand, within EX31_RS20980at 840.048 kb on + strand, within EX31_RS20980at 840.048 kb on + strand, within EX31_RS20980at 840.049 kb on - strand, within EX31_RS20980at 840.049 kb on - strand, within EX31_RS20980at 840.049 kb on - strand, within EX31_RS20980at 840.049 kb on - strand, within EX31_RS20980at 840.049 kb on - strand, within EX31_RS20980

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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836,982 + +1.2
837,019 + +0.4
837,085 - -0.0
837,168 + EX31_RS20970 0.19 -0.0
837,168 + EX31_RS20970 0.19 -0.4
837,194 + EX31_RS20970 0.21 +1.4
837,194 + EX31_RS20970 0.21 -0.3
837,195 - EX31_RS20970 0.22 -1.4
837,195 - EX31_RS20970 0.22 +0.6
837,195 - EX31_RS20970 0.22 -0.7
837,195 - EX31_RS20970 0.22 -0.0
837,197 + EX31_RS20970 0.22 -0.7
837,197 + EX31_RS20970 0.22 -0.0
837,197 + EX31_RS20970 0.22 -0.0
837,198 - EX31_RS20970 0.22 -1.5
837,312 - EX31_RS20970 0.35 +0.3
837,448 + EX31_RS20970 0.50 -0.2
837,512 + EX31_RS20970 0.57 +0.9
837,553 + EX31_RS20970 0.62 -0.4
837,565 + EX31_RS20970 0.63 +0.0
837,566 - EX31_RS20970 0.63 -0.7
837,566 - EX31_RS20970 0.63 -0.7
837,623 - EX31_RS20970 0.69 +0.1
837,670 + EX31_RS20970 0.75 -1.5
837,702 + EX31_RS20970 0.78 +0.2
837,728 + EX31_RS20970 0.81 +0.2
837,814 + +0.2
837,814 + +0.7
837,815 - +3.2
837,815 - -1.0
837,863 - +0.1
837,963 - -1.0
837,974 - -1.2
838,001 + -1.5
838,001 + -2.8
838,001 + -2.8
838,001 + -3.1
838,001 + -2.1
838,002 - -3.6
838,018 + -2.7
838,122 - EX31_RS20975 0.13 -2.9
838,138 + EX31_RS20975 0.14 -1.8
838,138 + EX31_RS20975 0.14 +0.1
838,138 + EX31_RS20975 0.14 -2.2
838,139 - EX31_RS20975 0.14 -2.7
838,139 - EX31_RS20975 0.14 -4.3
838,139 - EX31_RS20975 0.14 -3.4
838,180 - EX31_RS20975 0.17 -2.7
838,208 + EX31_RS20975 0.20 +0.1
838,363 + EX31_RS20975 0.32 -2.2
838,368 + EX31_RS20975 0.32 -2.1
838,368 + EX31_RS20975 0.32 -2.6
838,456 - EX31_RS20975 0.39 -3.9
838,537 - EX31_RS20975 0.46 -1.2
838,637 + EX31_RS20975 0.54 -2.4
838,637 + EX31_RS20975 0.54 -2.0
838,637 + EX31_RS20975 0.54 -3.1
838,638 - EX31_RS20975 0.54 -1.4
838,638 - EX31_RS20975 0.54 -2.0
838,638 - EX31_RS20975 0.54 -0.9
838,638 - EX31_RS20975 0.54 -0.7
838,638 - EX31_RS20975 0.54 -2.2
838,638 - EX31_RS20975 0.54 -4.2
838,638 - EX31_RS20975 0.54 -3.5
838,638 - EX31_RS20975 0.54 -2.2
839,088 + EX31_RS20975 0.90 -4.1
839,088 + EX31_RS20975 0.90 -3.2
839,089 - -2.6
839,089 - -2.0
839,089 - +0.1
839,208 + -2.0
839,226 + -0.9
839,227 - +0.8
839,227 - -0.4
839,275 - -1.9
839,338 + EX31_RS20980 0.10 -1.8
839,339 - EX31_RS20980 0.10 -4.1
839,339 - EX31_RS20980 0.10 -3.0
839,339 - EX31_RS20980 0.10 -3.9
839,340 + EX31_RS20980 0.10 -2.8
839,340 + EX31_RS20980 0.10 -1.2
839,341 - EX31_RS20980 0.11 -3.7
839,341 - EX31_RS20980 0.11 -4.0
839,632 + EX31_RS20980 0.37 -1.1
839,857 + EX31_RS20980 0.57 -0.2
839,944 + EX31_RS20980 0.65 -3.0
839,944 + EX31_RS20980 0.65 -0.7
840,048 + EX31_RS20980 0.75 -3.3
840,048 + EX31_RS20980 0.75 -1.7
840,048 + EX31_RS20980 0.75 -2.3
840,049 - EX31_RS20980 0.75 -3.0
840,049 - EX31_RS20980 0.75 -2.6
840,049 - EX31_RS20980 0.75 -1.9
840,049 - EX31_RS20980 0.75 -3.5
840,049 - EX31_RS20980 0.75 -4.6

Or see this region's nucleotide sequence