Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00794

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00793 and CCNA_00794 are separated by 109 nucleotidesCCNA_00794 and CCNA_00795 are separated by 10 nucleotidesCCNA_00795 and CCNA_00796 overlap by 8 nucleotides CCNA_00793: CCNA_00793 - phosphatidylglycerol glycosyltransferase, at 856,299 to 857,666 _00793 CCNA_00794: CCNA_00794 - conserved membrane spanning protein, at 857,776 to 858,969 _00794 CCNA_00795: CCNA_00795 - two-component response regulator FixJ, at 858,980 to 859,588 _00795 CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068 _00796 Position (kb) 857 858 859Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 856.808 kb on - strand, within CCNA_00793at 856.810 kb on + strand, within CCNA_00793at 856.810 kb on + strand, within CCNA_00793at 856.810 kb on + strand, within CCNA_00793at 856.850 kb on + strand, within CCNA_00793at 856.850 kb on + strand, within CCNA_00793at 856.859 kb on + strand, within CCNA_00793at 856.859 kb on + strand, within CCNA_00793at 856.861 kb on + strand, within CCNA_00793at 856.867 kb on - strand, within CCNA_00793at 856.867 kb on - strand, within CCNA_00793at 856.869 kb on - strand, within CCNA_00793at 856.906 kb on + strand, within CCNA_00793at 856.929 kb on - strand, within CCNA_00793at 856.933 kb on - strand, within CCNA_00793at 856.933 kb on - strand, within CCNA_00793at 856.940 kb on + strand, within CCNA_00793at 856.940 kb on + strand, within CCNA_00793at 856.949 kb on - strand, within CCNA_00793at 856.949 kb on - strand, within CCNA_00793at 856.949 kb on - strand, within CCNA_00793at 856.966 kb on + strand, within CCNA_00793at 856.966 kb on + strand, within CCNA_00793at 856.974 kb on - strand, within CCNA_00793at 856.984 kb on - strand, within CCNA_00793at 856.984 kb on - strand, within CCNA_00793at 856.996 kb on + strand, within CCNA_00793at 857.011 kb on - strand, within CCNA_00793at 857.013 kb on + strand, within CCNA_00793at 857.013 kb on + strand, within CCNA_00793at 857.020 kb on + strand, within CCNA_00793at 857.020 kb on + strand, within CCNA_00793at 857.021 kb on - strand, within CCNA_00793at 857.025 kb on + strand, within CCNA_00793at 857.028 kb on - strand, within CCNA_00793at 857.028 kb on - strand, within CCNA_00793at 857.048 kb on - strand, within CCNA_00793at 857.056 kb on + strand, within CCNA_00793at 857.058 kb on + strand, within CCNA_00793at 857.066 kb on - strand, within CCNA_00793at 857.170 kb on + strand, within CCNA_00793at 857.178 kb on - strand, within CCNA_00793at 857.207 kb on + strand, within CCNA_00793at 857.223 kb on + strand, within CCNA_00793at 857.226 kb on - strand, within CCNA_00793at 857.231 kb on - strand, within CCNA_00793at 857.231 kb on - strand, within CCNA_00793at 857.235 kb on + strand, within CCNA_00793at 857.235 kb on + strand, within CCNA_00793at 857.243 kb on - strand, within CCNA_00793at 857.243 kb on - strand, within CCNA_00793at 857.243 kb on - strand, within CCNA_00793at 857.274 kb on + strand, within CCNA_00793at 857.274 kb on + strand, within CCNA_00793at 857.274 kb on + strand, within CCNA_00793at 857.282 kb on - strand, within CCNA_00793at 857.282 kb on - strand, within CCNA_00793at 857.282 kb on - strand, within CCNA_00793at 857.299 kb on - strand, within CCNA_00793at 857.299 kb on - strand, within CCNA_00793at 857.322 kb on + strand, within CCNA_00793at 857.330 kb on - strand, within CCNA_00793at 857.343 kb on + strand, within CCNA_00793at 857.351 kb on - strand, within CCNA_00793at 857.358 kb on + strand, within CCNA_00793at 857.385 kb on - strand, within CCNA_00793at 857.392 kb on - strand, within CCNA_00793at 857.424 kb on + strand, within CCNA_00793at 857.424 kb on + strand, within CCNA_00793at 857.442 kb on + strand, within CCNA_00793at 857.442 kb on + strand, within CCNA_00793at 857.474 kb on + strand, within CCNA_00793at 857.475 kb on + strand, within CCNA_00793at 857.475 kb on + strand, within CCNA_00793at 857.483 kb on - strand, within CCNA_00793at 857.483 kb on - strand, within CCNA_00793at 857.483 kb on - strand, within CCNA_00793at 857.483 kb on - strand, within CCNA_00793at 857.483 kb on - strand, within CCNA_00793at 857.493 kb on + strand, within CCNA_00793at 857.501 kb on - strand, within CCNA_00793at 857.531 kb on - strandat 857.539 kb on - strandat 857.544 kb on - strandat 857.545 kb on - strandat 857.553 kb on - strandat 857.565 kb on + strandat 857.566 kb on - strandat 857.566 kb on - strandat 857.573 kb on - strandat 857.642 kb on + strandat 857.661 kb on + strandat 857.662 kb on - strandat 857.744 kb on + strandat 857.762 kb on + strandat 857.819 kb on + strandat 857.834 kb on + strandat 857.839 kb on + strandat 857.839 kb on + strandat 857.849 kb on + strandat 857.888 kb on + strandat 857.930 kb on + strand, within CCNA_00794at 857.938 kb on + strand, within CCNA_00794at 857.943 kb on + strand, within CCNA_00794at 857.963 kb on + strand, within CCNA_00794at 857.968 kb on + strand, within CCNA_00794at 857.976 kb on - strand, within CCNA_00794at 857.976 kb on - strandat 858.033 kb on - strand, within CCNA_00794at 858.049 kb on + strand, within CCNA_00794at 858.049 kb on + strand, within CCNA_00794at 858.067 kb on + strand, within CCNA_00794at 858.067 kb on + strand, within CCNA_00794at 858.080 kb on + strand, within CCNA_00794at 858.111 kb on + strand, within CCNA_00794at 858.119 kb on - strand, within CCNA_00794at 858.125 kb on + strand, within CCNA_00794at 858.125 kb on + strand, within CCNA_00794at 858.125 kb on + strand, within CCNA_00794at 858.150 kb on + strand, within CCNA_00794at 858.168 kb on - strand, within CCNA_00794at 858.178 kb on + strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.186 kb on - strand, within CCNA_00794at 858.222 kb on + strand, within CCNA_00794at 858.230 kb on - strand, within CCNA_00794at 858.230 kb on - strand, within CCNA_00794at 858.283 kb on + strand, within CCNA_00794at 858.293 kb on + strand, within CCNA_00794at 858.301 kb on - strand, within CCNA_00794at 858.304 kb on + strand, within CCNA_00794at 858.332 kb on + strand, within CCNA_00794at 858.340 kb on - strand, within CCNA_00794at 858.353 kb on - strand, within CCNA_00794at 858.357 kb on + strand, within CCNA_00794at 858.365 kb on - strand, within CCNA_00794at 858.367 kb on + strand, within CCNA_00794at 858.387 kb on + strand, within CCNA_00794at 858.403 kb on + strand, within CCNA_00794at 858.413 kb on + strand, within CCNA_00794at 858.423 kb on + strand, within CCNA_00794at 858.423 kb on + strand, within CCNA_00794at 858.442 kb on + strand, within CCNA_00794at 858.447 kb on + strand, within CCNA_00794at 858.450 kb on - strand, within CCNA_00794at 858.462 kb on - strand, within CCNA_00794at 858.484 kb on - strand, within CCNA_00794at 858.495 kb on - strand, within CCNA_00794at 858.538 kb on - strand, within CCNA_00794at 858.566 kb on + strand, within CCNA_00794at 858.566 kb on + strand, within CCNA_00794at 858.602 kb on - strand, within CCNA_00794at 858.624 kb on - strand, within CCNA_00794at 858.625 kb on + strand, within CCNA_00794at 858.630 kb on + strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.642 kb on + strand, within CCNA_00794at 858.679 kb on + strand, within CCNA_00794at 858.682 kb on - strand, within CCNA_00794at 858.682 kb on - strand, within CCNA_00794at 858.700 kb on + strand, within CCNA_00794at 858.728 kb on + strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.760 kb on + strand, within CCNA_00794at 858.856 kb on - strandat 858.930 kb on + strandat 858.938 kb on - strandat 858.938 kb on - strandat 858.966 kb on - strandat 858.973 kb on + strandat 859.008 kb on - strandat 859.064 kb on + strand, within CCNA_00795at 859.064 kb on + strand, within CCNA_00795at 859.064 kb on + strand, within CCNA_00795at 859.091 kb on - strand, within CCNA_00795at 859.175 kb on - strand, within CCNA_00795at 859.208 kb on - strand, within CCNA_00795at 859.208 kb on - strand, within CCNA_00795at 859.215 kb on + strand, within CCNA_00795at 859.215 kb on + strand, within CCNA_00795at 859.297 kb on - strand, within CCNA_00795at 859.406 kb on + strand, within CCNA_00795at 859.408 kb on + strand, within CCNA_00795at 859.414 kb on - strand, within CCNA_00795at 859.416 kb on - strand, within CCNA_00795at 859.423 kb on + strand, within CCNA_00795at 859.435 kb on - strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.451 kb on - strand, within CCNA_00795at 859.492 kb on - strand, within CCNA_00795at 859.497 kb on + strand, within CCNA_00795at 859.505 kb on - strand, within CCNA_00795at 859.577 kb on + strandat 859.584 kb on + strandat 859.606 kb on - strandat 859.618 kb on - strandat 859.622 kb on - strandat 859.629 kb on - strandat 859.629 kb on - strandat 859.667 kb on + strandat 859.672 kb on + strandat 859.672 kb on + strandat 859.680 kb on - strandat 859.701 kb on - strandat 859.729 kb on + strandat 859.737 kb on - strand, within CCNA_00796at 859.737 kb on - strand, within CCNA_00796at 859.781 kb on - strand, within CCNA_00796at 859.781 kb on - strand, within CCNA_00796at 859.820 kb on + strand, within CCNA_00796at 859.823 kb on - strand, within CCNA_00796at 859.852 kb on - strand, within CCNA_00796at 859.852 kb on - strand, within CCNA_00796at 859.854 kb on + strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.919 kb on - strand, within CCNA_00796

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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856,808 - CCNA_00793 0.37 -0.1
856,810 + CCNA_00793 0.37 +1.4
856,810 + CCNA_00793 0.37 +1.5
856,810 + CCNA_00793 0.37 +1.5
856,850 + CCNA_00793 0.40 -0.4
856,850 + CCNA_00793 0.40 -0.0
856,859 + CCNA_00793 0.41 +0.6
856,859 + CCNA_00793 0.41 -0.5
856,861 + CCNA_00793 0.41 +0.2
856,867 - CCNA_00793 0.42 -1.1
856,867 - CCNA_00793 0.42 -2.7
856,869 - CCNA_00793 0.42 -1.1
856,906 + CCNA_00793 0.44 +1.1
856,929 - CCNA_00793 0.46 -0.7
856,933 - CCNA_00793 0.46 -1.7
856,933 - CCNA_00793 0.46 -2.8
856,940 + CCNA_00793 0.47 +0.4
856,940 + CCNA_00793 0.47 +0.1
856,949 - CCNA_00793 0.48 -0.1
856,949 - CCNA_00793 0.48 +0.1
856,949 - CCNA_00793 0.48 -0.3
856,966 + CCNA_00793 0.49 -0.2
856,966 + CCNA_00793 0.49 +1.6
856,974 - CCNA_00793 0.49 -0.6
856,984 - CCNA_00793 0.50 -0.5
856,984 - CCNA_00793 0.50 -0.1
856,996 + CCNA_00793 0.51 -0.6
857,011 - CCNA_00793 0.52 -1.1
857,013 + CCNA_00793 0.52 +0.1
857,013 + CCNA_00793 0.52 -0.7
857,020 + CCNA_00793 0.53 +0.5
857,020 + CCNA_00793 0.53 -2.3
857,021 - CCNA_00793 0.53 -0.1
857,025 + CCNA_00793 0.53 -0.3
857,028 - CCNA_00793 0.53 -0.7
857,028 - CCNA_00793 0.53 +0.4
857,048 - CCNA_00793 0.55 -0.3
857,056 + CCNA_00793 0.55 -0.4
857,058 + CCNA_00793 0.55 -0.5
857,066 - CCNA_00793 0.56 -0.9
857,170 + CCNA_00793 0.64 -0.2
857,178 - CCNA_00793 0.64 +2.4
857,207 + CCNA_00793 0.66 -0.6
857,223 + CCNA_00793 0.68 +0.6
857,226 - CCNA_00793 0.68 +1.3
857,231 - CCNA_00793 0.68 -0.1
857,231 - CCNA_00793 0.68 +0.7
857,235 + CCNA_00793 0.68 -0.5
857,235 + CCNA_00793 0.68 -0.1
857,243 - CCNA_00793 0.69 -0.7
857,243 - CCNA_00793 0.69 -0.2
857,243 - CCNA_00793 0.69 -0.5
857,274 + CCNA_00793 0.71 -0.3
857,274 + CCNA_00793 0.71 -0.5
857,274 + CCNA_00793 0.71 +0.1
857,282 - CCNA_00793 0.72 -0.3
857,282 - CCNA_00793 0.72 +1.0
857,282 - CCNA_00793 0.72 -1.4
857,299 - CCNA_00793 0.73 +0.6
857,299 - CCNA_00793 0.73 +0.3
857,322 + CCNA_00793 0.75 -1.1
857,330 - CCNA_00793 0.75 -0.2
857,343 + CCNA_00793 0.76 -0.5
857,351 - CCNA_00793 0.77 -2.6
857,358 + CCNA_00793 0.77 -0.2
857,385 - CCNA_00793 0.79 +0.3
857,392 - CCNA_00793 0.80 +2.2
857,424 + CCNA_00793 0.82 -0.4
857,424 + CCNA_00793 0.82 -0.4
857,442 + CCNA_00793 0.84 -1.7
857,442 + CCNA_00793 0.84 -0.4
857,474 + CCNA_00793 0.86 -0.9
857,475 + CCNA_00793 0.86 -0.4
857,475 + CCNA_00793 0.86 -1.1
857,483 - CCNA_00793 0.87 +0.1
857,483 - CCNA_00793 0.87 -0.1
857,483 - CCNA_00793 0.87 -1.1
857,483 - CCNA_00793 0.87 -1.4
857,483 - CCNA_00793 0.87 -2.6
857,493 + CCNA_00793 0.87 -0.0
857,501 - CCNA_00793 0.88 -0.4
857,531 - +0.3
857,539 - +0.4
857,544 - -1.0
857,545 - -1.3
857,553 - -0.6
857,565 + +0.0
857,566 - -0.1
857,566 - +0.5
857,573 - -1.0
857,642 + -1.9
857,661 + -0.9
857,662 - +0.7
857,744 + -0.1
857,762 + -0.6
857,819 + -0.3
857,834 + -0.6
857,839 + -1.7
857,839 + +0.1
857,849 + -0.1
857,888 + +0.4
857,930 + CCNA_00794 0.13 +1.7
857,938 + CCNA_00794 0.14 -0.1
857,943 + CCNA_00794 0.14 -1.7
857,963 + CCNA_00794 0.16 -0.7
857,968 + CCNA_00794 0.16 -2.5
857,976 - CCNA_00794 0.17 -2.9
857,976 - -0.1
858,033 - CCNA_00794 0.22 -1.4
858,049 + CCNA_00794 0.23 -2.1
858,049 + CCNA_00794 0.23 -0.6
858,067 + CCNA_00794 0.24 +2.2
858,067 + CCNA_00794 0.24 -0.7
858,080 + CCNA_00794 0.25 -0.2
858,111 + CCNA_00794 0.28 -0.7
858,119 - CCNA_00794 0.29 -1.5
858,125 + CCNA_00794 0.29 -0.4
858,125 + CCNA_00794 0.29 +1.1
858,125 + CCNA_00794 0.29 +1.2
858,150 + CCNA_00794 0.31 +0.4
858,168 - CCNA_00794 0.33 -2.1
858,178 + CCNA_00794 0.34 -1.1
858,186 - CCNA_00794 0.34 -0.9
858,186 - CCNA_00794 0.34 +0.4
858,222 + CCNA_00794 0.37 +1.3
858,230 - CCNA_00794 0.38 -0.9
858,230 - CCNA_00794 0.38 -1.4
858,283 + CCNA_00794 0.42 -0.9
858,293 + CCNA_00794 0.43 -3.1
858,301 - CCNA_00794 0.44 -0.9
858,304 + CCNA_00794 0.44 +0.4
858,332 + CCNA_00794 0.47 -0.2
858,340 - CCNA_00794 0.47 -0.8
858,353 - CCNA_00794 0.48 -2.0
858,357 + CCNA_00794 0.49 -1.1
858,365 - CCNA_00794 0.49 +0.3
858,367 + CCNA_00794 0.49 -1.1
858,387 + CCNA_00794 0.51 -0.7
858,403 + CCNA_00794 0.53 -1.1
858,413 + CCNA_00794 0.53 -2.3
858,423 + CCNA_00794 0.54 -0.4
858,423 + CCNA_00794 0.54 -1.1
858,442 + CCNA_00794 0.56 -1.6
858,447 + CCNA_00794 0.56 -1.1
858,450 - CCNA_00794 0.56 -0.5
858,462 - CCNA_00794 0.57 -1.6
858,484 - CCNA_00794 0.59 +0.4
858,495 - CCNA_00794 0.60 -0.3
858,538 - CCNA_00794 0.64 -1.7
858,566 + CCNA_00794 0.66 +0.4
858,566 + CCNA_00794 0.66 -1.0
858,602 - CCNA_00794 0.69 -2.1
858,624 - CCNA_00794 0.71 +1.4
858,625 + CCNA_00794 0.71 -0.3
858,630 + CCNA_00794 0.72 -1.2
858,633 - CCNA_00794 0.72 -0.7
858,633 - CCNA_00794 0.72 +0.1
858,633 - CCNA_00794 0.72 -0.4
858,633 - CCNA_00794 0.72 -1.7
858,642 + CCNA_00794 0.73 -0.6
858,679 + CCNA_00794 0.76 -0.4
858,682 - CCNA_00794 0.76 -0.7
858,682 - CCNA_00794 0.76 -1.3
858,700 + CCNA_00794 0.77 +0.3
858,728 + CCNA_00794 0.80 +1.4
858,730 + CCNA_00794 0.80 -0.7
858,730 + CCNA_00794 0.80 +0.2
858,738 - CCNA_00794 0.81 +0.5
858,738 - CCNA_00794 0.81 -0.6
858,738 - CCNA_00794 0.81 -1.3
858,760 + CCNA_00794 0.82 -0.7
858,856 - -0.5
858,930 + +0.4
858,938 - -1.2
858,938 - +0.4
858,966 - +0.7
858,973 + -0.9
859,008 - -0.6
859,064 + CCNA_00795 0.14 -2.0
859,064 + CCNA_00795 0.14 -2.9
859,064 + CCNA_00795 0.14 -0.7
859,091 - CCNA_00795 0.18 -1.8
859,175 - CCNA_00795 0.32 -0.5
859,208 - CCNA_00795 0.37 -0.6
859,208 - CCNA_00795 0.37 -1.5
859,215 + CCNA_00795 0.39 -3.0
859,215 + CCNA_00795 0.39 -1.6
859,297 - CCNA_00795 0.52 -1.3
859,406 + CCNA_00795 0.70 -1.6
859,408 + CCNA_00795 0.70 -1.1
859,414 - CCNA_00795 0.71 -2.7
859,416 - CCNA_00795 0.72 -1.9
859,423 + CCNA_00795 0.73 -0.7
859,435 - CCNA_00795 0.75 -0.4
859,443 + CCNA_00795 0.76 -2.4
859,443 + CCNA_00795 0.76 -2.0
859,451 - CCNA_00795 0.77 -3.0
859,492 - CCNA_00795 0.84 -0.2
859,497 + CCNA_00795 0.85 -1.8
859,505 - CCNA_00795 0.86 -1.8
859,577 + -1.4
859,584 + -0.5
859,606 - +1.4
859,618 - +2.0
859,622 - +0.2
859,629 - +0.7
859,629 - +0.0
859,667 + -1.8
859,672 + -1.8
859,672 + -2.9
859,680 - -2.7
859,701 - -0.7
859,729 + -2.9
859,737 - CCNA_00796 0.10 -3.3
859,737 - CCNA_00796 0.10 -2.0
859,781 - CCNA_00796 0.13 -1.8
859,781 - CCNA_00796 0.13 -3.1
859,820 + CCNA_00796 0.16 -0.7
859,823 - CCNA_00796 0.16 -2.7
859,852 - CCNA_00796 0.18 -1.7
859,852 - CCNA_00796 0.18 -0.4
859,854 + CCNA_00796 0.18 -3.2
859,862 - CCNA_00796 0.19 -1.2
859,862 - CCNA_00796 0.19 -1.7
859,862 - CCNA_00796 0.19 -2.0
859,877 + CCNA_00796 0.20 -0.6
859,877 + CCNA_00796 0.20 -1.9
859,877 + CCNA_00796 0.20 -3.0
859,919 - CCNA_00796 0.23 -3.0

Or see this region's nucleotide sequence