Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00061

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00059 and CCNA_00060 are separated by 69 nucleotidesCCNA_00060 and CCNA_00061 are separated by 121 nucleotidesCCNA_00061 and CCNA_00062 are separated by 173 nucleotides CCNA_00059: CCNA_00059 - oxygen-insensitive NADH nitroreductase, at 60,534 to 61,121 _00059 CCNA_00060: CCNA_00060 - mitochondrial-type Fe-S cluster assembly protein NFU, at 61,191 to 61,763 _00060 CCNA_00061: CCNA_00061 - cytochrome p450, at 61,885 to 63,153 _00061 CCNA_00062: CCNA_00062 - tryptophanyl-tRNA synthetase, at 63,327 to 64,361 _00062 Position (kb) 61 62 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1at 60.887 kb on + strand, within CCNA_00059at 60.916 kb on - strand, within CCNA_00059at 60.966 kb on - strand, within CCNA_00059at 60.976 kb on - strand, within CCNA_00059at 61.000 kb on + strand, within CCNA_00059at 61.000 kb on + strand, within CCNA_00059at 61.000 kb on + strand, within CCNA_00059at 61.008 kb on - strand, within CCNA_00059at 61.008 kb on - strand, within CCNA_00059at 61.008 kb on - strand, within CCNA_00059at 61.076 kb on - strandat 61.089 kb on - strandat 61.175 kb on + strandat 61.189 kb on + strandat 61.196 kb on - strandat 61.196 kb on - strandat 61.754 kb on + strandat 61.754 kb on + strandat 61.754 kb on + strandat 61.754 kb on + strandat 61.754 kb on + strandat 61.754 kb on + strandat 61.762 kb on - strandat 61.762 kb on - strandat 61.762 kb on - strandat 61.762 kb on - strandat 61.762 kb on - strandat 61.770 kb on + strandat 61.796 kb on - strandat 61.870 kb on - strandat 61.904 kb on + strandat 61.905 kb on + strandat 61.912 kb on - strandat 61.913 kb on - strandat 61.913 kb on - strandat 61.929 kb on + strandat 61.929 kb on + strandat 61.929 kb on + strandat 61.931 kb on - strandat 61.937 kb on - strandat 61.937 kb on - strandat 61.942 kb on - strandat 61.942 kb on - strandat 61.953 kb on + strandat 61.977 kb on + strandat 61.977 kb on + strandat 61.985 kb on - strandat 61.985 kb on - strandat 61.985 kb on - strandat 61.986 kb on - strandat 61.993 kb on + strandat 62.048 kb on + strand, within CCNA_00061at 62.048 kb on - strand, within CCNA_00061at 62.058 kb on + strand, within CCNA_00061at 62.059 kb on - strand, within CCNA_00061at 62.070 kb on - strand, within CCNA_00061at 62.092 kb on + strand, within CCNA_00061at 62.094 kb on + strand, within CCNA_00061at 62.124 kb on - strand, within CCNA_00061at 62.140 kb on + strand, within CCNA_00061at 62.176 kb on + strand, within CCNA_00061at 62.185 kb on - strand, within CCNA_00061at 62.208 kb on - strand, within CCNA_00061at 62.281 kb on + strand, within CCNA_00061at 62.281 kb on - strand, within CCNA_00061at 62.301 kb on + strand, within CCNA_00061at 62.306 kb on - strand, within CCNA_00061at 62.306 kb on - strand, within CCNA_00061at 62.363 kb on - strand, within CCNA_00061at 62.375 kb on + strand, within CCNA_00061at 62.411 kb on - strand, within CCNA_00061at 62.425 kb on + strand, within CCNA_00061at 62.435 kb on + strand, within CCNA_00061at 62.435 kb on + strand, within CCNA_00061at 62.443 kb on - strand, within CCNA_00061at 62.443 kb on - strand, within CCNA_00061at 62.443 kb on - strand, within CCNA_00061at 62.443 kb on - strand, within CCNA_00061at 62.458 kb on + strand, within CCNA_00061at 62.476 kb on - strand, within CCNA_00061at 62.505 kb on + strand, within CCNA_00061at 62.563 kb on - strand, within CCNA_00061at 62.589 kb on + strand, within CCNA_00061at 62.630 kb on - strand, within CCNA_00061at 62.683 kb on - strand, within CCNA_00061at 62.699 kb on + strand, within CCNA_00061at 62.706 kb on - strand, within CCNA_00061at 62.707 kb on - strand, within CCNA_00061at 62.707 kb on - strand, within CCNA_00061at 62.709 kb on + strand, within CCNA_00061at 62.717 kb on - strand, within CCNA_00061at 62.717 kb on - strand, within CCNA_00061at 62.717 kb on - strand, within CCNA_00061at 62.729 kb on + strand, within CCNA_00061at 62.736 kb on + strand, within CCNA_00061at 62.737 kb on - strand, within CCNA_00061at 62.742 kb on + strand, within CCNA_00061at 62.747 kb on + strand, within CCNA_00061at 62.795 kb on + strand, within CCNA_00061at 62.805 kb on - strand, within CCNA_00061at 62.870 kb on + strand, within CCNA_00061at 62.892 kb on + strand, within CCNA_00061at 62.931 kb on + strand, within CCNA_00061at 62.939 kb on - strand, within CCNA_00061at 62.939 kb on - strand, within CCNA_00061at 62.946 kb on + strand, within CCNA_00061at 62.946 kb on + strand, within CCNA_00061at 62.993 kb on + strand, within CCNA_00061at 63.021 kb on + strand, within CCNA_00061at 63.022 kb on - strand, within CCNA_00061at 63.029 kb on - strandat 63.029 kb on - strandat 63.070 kb on - strandat 63.081 kb on + strandat 63.081 kb on + strandat 63.081 kb on + strandat 63.090 kb on + strandat 63.147 kb on + strandat 63.147 kb on + strandat 63.147 kb on + strandat 63.147 kb on + strandat 63.155 kb on - strandat 63.155 kb on - strandat 63.157 kb on + strandat 63.189 kb on - strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.206 kb on - strandat 63.239 kb on - strandat 63.276 kb on - strandat 63.299 kb on - strandat 63.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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60,887 + CCNA_00059 0.60 -1.8
60,916 - CCNA_00059 0.65 -0.2
60,966 - CCNA_00059 0.73 -0.2
60,976 - CCNA_00059 0.75 +0.1
61,000 + CCNA_00059 0.79 +0.7
61,000 + CCNA_00059 0.79 -1.3
61,000 + CCNA_00059 0.79 -2.4
61,008 - CCNA_00059 0.81 -1.2
61,008 - CCNA_00059 0.81 +1.2
61,008 - CCNA_00059 0.81 -0.4
61,076 - -0.3
61,089 - +0.3
61,175 + -1.7
61,189 + -1.9
61,196 - +0.7
61,196 - -0.1
61,754 + -2.3
61,754 + -2.3
61,754 + -2.2
61,754 + -2.3
61,754 + +0.2
61,754 + -1.6
61,762 - +0.1
61,762 - +0.9
61,762 - +0.4
61,762 - -0.3
61,762 - +1.0
61,770 + -1.1
61,796 - +0.9
61,870 - +0.7
61,904 + -1.8
61,905 + +0.3
61,912 - -1.3
61,913 - -2.3
61,913 - -2.6
61,929 + -1.2
61,929 + -2.2
61,929 + -2.6
61,931 - -1.1
61,937 - -1.2
61,937 - -1.6
61,942 - -0.3
61,942 - -0.5
61,953 + +0.4
61,977 + -1.2
61,977 + -0.8
61,985 - -1.1
61,985 - -1.7
61,985 - -1.7
61,986 - -1.1
61,993 + +0.4
62,048 + CCNA_00061 0.13 -0.0
62,048 - CCNA_00061 0.13 -2.5
62,058 + CCNA_00061 0.14 -1.7
62,059 - CCNA_00061 0.14 -2.0
62,070 - CCNA_00061 0.15 +0.7
62,092 + CCNA_00061 0.16 -0.7
62,094 + CCNA_00061 0.16 -0.1
62,124 - CCNA_00061 0.19 -1.6
62,140 + CCNA_00061 0.20 -1.4
62,176 + CCNA_00061 0.23 -2.1
62,185 - CCNA_00061 0.24 -1.8
62,208 - CCNA_00061 0.25 -0.3
62,281 + CCNA_00061 0.31 -2.0
62,281 - CCNA_00061 0.31 -1.8
62,301 + CCNA_00061 0.33 +0.2
62,306 - CCNA_00061 0.33 -3.2
62,306 - CCNA_00061 0.33 -1.2
62,363 - CCNA_00061 0.38 -0.3
62,375 + CCNA_00061 0.39 -1.9
62,411 - CCNA_00061 0.41 -1.5
62,425 + CCNA_00061 0.43 -1.2
62,435 + CCNA_00061 0.43 +0.5
62,435 + CCNA_00061 0.43 -0.6
62,443 - CCNA_00061 0.44 -0.3
62,443 - CCNA_00061 0.44 -1.8
62,443 - CCNA_00061 0.44 -0.8
62,443 - CCNA_00061 0.44 +0.4
62,458 + CCNA_00061 0.45 -3.0
62,476 - CCNA_00061 0.47 -0.6
62,505 + CCNA_00061 0.49 -1.7
62,563 - CCNA_00061 0.53 -0.3
62,589 + CCNA_00061 0.55 -0.3
62,630 - CCNA_00061 0.59 -0.1
62,683 - CCNA_00061 0.63 +0.3
62,699 + CCNA_00061 0.64 +1.6
62,706 - CCNA_00061 0.65 -1.9
62,707 - CCNA_00061 0.65 -1.1
62,707 - CCNA_00061 0.65 -0.6
62,709 + CCNA_00061 0.65 -1.1
62,717 - CCNA_00061 0.66 -0.2
62,717 - CCNA_00061 0.66 +1.2
62,717 - CCNA_00061 0.66 -0.3
62,729 + CCNA_00061 0.67 -2.0
62,736 + CCNA_00061 0.67 +0.5
62,737 - CCNA_00061 0.67 -1.1
62,742 + CCNA_00061 0.68 -1.3
62,747 + CCNA_00061 0.68 -1.0
62,795 + CCNA_00061 0.72 -0.8
62,805 - CCNA_00061 0.72 -1.2
62,870 + CCNA_00061 0.78 +0.1
62,892 + CCNA_00061 0.79 -1.5
62,931 + CCNA_00061 0.82 -1.2
62,939 - CCNA_00061 0.83 +0.5
62,939 - CCNA_00061 0.83 +0.5
62,946 + CCNA_00061 0.84 +0.4
62,946 + CCNA_00061 0.84 -0.8
62,993 + CCNA_00061 0.87 -1.8
63,021 + CCNA_00061 0.90 +0.1
63,022 - CCNA_00061 0.90 -0.8
63,029 - +0.4
63,029 - -1.1
63,070 - -1.5
63,081 + -0.3
63,081 + -0.9
63,081 + +0.1
63,090 + -0.4
63,147 + -3.0
63,147 + +0.9
63,147 + +1.2
63,147 + +0.3
63,155 - +0.4
63,155 - -0.3
63,157 + -0.5
63,189 - -0.0
63,198 + +0.4
63,198 + +0.3
63,198 + +0.2
63,198 + -1.5
63,206 - +0.6
63,239 - +0.6
63,276 - -0.2
63,299 - +0.8
63,327 - +0.6

Or see this region's nucleotide sequence