Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00059 and CCNA_00060 are separated by 69 nucleotides CCNA_00060 and CCNA_00061 are separated by 121 nucleotides CCNA_00061 and CCNA_00062 are separated by 173 nucleotides
CCNA_00059: CCNA_00059 - oxygen-insensitive NADH nitroreductase, at 60,534 to 61,121
_00059
CCNA_00060: CCNA_00060 - mitochondrial-type Fe-S cluster assembly protein NFU, at 61,191 to 61,763
_00060
CCNA_00061: CCNA_00061 - cytochrome p450, at 61,885 to 63,153
_00061
CCNA_00062: CCNA_00062 - tryptophanyl-tRNA synthetase, at 63,327 to 64,361
_00062
Position (kb)
61
62
63
64 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 60.887 kb on + strand, within CCNA_00059 at 60.916 kb on - strand, within CCNA_00059 at 60.966 kb on - strand, within CCNA_00059 at 60.976 kb on - strand, within CCNA_00059 at 61.000 kb on + strand, within CCNA_00059 at 61.000 kb on + strand, within CCNA_00059 at 61.000 kb on + strand, within CCNA_00059 at 61.008 kb on - strand, within CCNA_00059 at 61.008 kb on - strand, within CCNA_00059 at 61.008 kb on - strand, within CCNA_00059 at 61.076 kb on - strand at 61.089 kb on - strand at 61.175 kb on + strand at 61.189 kb on + strand at 61.196 kb on - strand at 61.196 kb on - strand at 61.754 kb on + strand at 61.754 kb on + strand at 61.754 kb on + strand at 61.754 kb on + strand at 61.754 kb on + strand at 61.754 kb on + strand at 61.762 kb on - strand at 61.762 kb on - strand at 61.762 kb on - strand at 61.762 kb on - strand at 61.762 kb on - strand at 61.770 kb on + strand at 61.796 kb on - strand at 61.870 kb on - strand at 61.904 kb on + strand at 61.905 kb on + strand at 61.912 kb on - strand at 61.913 kb on - strand at 61.913 kb on - strand at 61.929 kb on + strand at 61.929 kb on + strand at 61.929 kb on + strand at 61.931 kb on - strand at 61.937 kb on - strand at 61.937 kb on - strand at 61.942 kb on - strand at 61.942 kb on - strand at 61.953 kb on + strand at 61.977 kb on + strand at 61.977 kb on + strand at 61.985 kb on - strand at 61.985 kb on - strand at 61.985 kb on - strand at 61.986 kb on - strand at 61.993 kb on + strand at 62.048 kb on + strand, within CCNA_00061 at 62.048 kb on - strand, within CCNA_00061 at 62.058 kb on + strand, within CCNA_00061 at 62.059 kb on - strand, within CCNA_00061 at 62.070 kb on - strand, within CCNA_00061 at 62.092 kb on + strand, within CCNA_00061 at 62.094 kb on + strand, within CCNA_00061 at 62.124 kb on - strand, within CCNA_00061 at 62.140 kb on + strand, within CCNA_00061 at 62.176 kb on + strand, within CCNA_00061 at 62.185 kb on - strand, within CCNA_00061 at 62.208 kb on - strand, within CCNA_00061 at 62.281 kb on + strand, within CCNA_00061 at 62.281 kb on - strand, within CCNA_00061 at 62.301 kb on + strand, within CCNA_00061 at 62.306 kb on - strand, within CCNA_00061 at 62.306 kb on - strand, within CCNA_00061 at 62.363 kb on - strand, within CCNA_00061 at 62.375 kb on + strand, within CCNA_00061 at 62.411 kb on - strand, within CCNA_00061 at 62.425 kb on + strand, within CCNA_00061 at 62.435 kb on + strand, within CCNA_00061 at 62.435 kb on + strand, within CCNA_00061 at 62.443 kb on - strand, within CCNA_00061 at 62.443 kb on - strand, within CCNA_00061 at 62.443 kb on - strand, within CCNA_00061 at 62.443 kb on - strand, within CCNA_00061 at 62.458 kb on + strand, within CCNA_00061 at 62.476 kb on - strand, within CCNA_00061 at 62.505 kb on + strand, within CCNA_00061 at 62.563 kb on - strand, within CCNA_00061 at 62.589 kb on + strand, within CCNA_00061 at 62.630 kb on - strand, within CCNA_00061 at 62.683 kb on - strand, within CCNA_00061 at 62.699 kb on + strand, within CCNA_00061 at 62.706 kb on - strand, within CCNA_00061 at 62.707 kb on - strand, within CCNA_00061 at 62.707 kb on - strand, within CCNA_00061 at 62.709 kb on + strand, within CCNA_00061 at 62.717 kb on - strand, within CCNA_00061 at 62.717 kb on - strand, within CCNA_00061 at 62.717 kb on - strand, within CCNA_00061 at 62.729 kb on + strand, within CCNA_00061 at 62.736 kb on + strand, within CCNA_00061 at 62.737 kb on - strand, within CCNA_00061 at 62.742 kb on + strand, within CCNA_00061 at 62.747 kb on + strand, within CCNA_00061 at 62.795 kb on + strand, within CCNA_00061 at 62.805 kb on - strand, within CCNA_00061 at 62.870 kb on + strand, within CCNA_00061 at 62.892 kb on + strand, within CCNA_00061 at 62.931 kb on + strand, within CCNA_00061 at 62.939 kb on - strand, within CCNA_00061 at 62.939 kb on - strand, within CCNA_00061 at 62.946 kb on + strand, within CCNA_00061 at 62.946 kb on + strand, within CCNA_00061 at 62.993 kb on + strand, within CCNA_00061 at 63.021 kb on + strand, within CCNA_00061 at 63.022 kb on - strand, within CCNA_00061 at 63.029 kb on - strand at 63.029 kb on - strand at 63.070 kb on - strand at 63.081 kb on + strand at 63.081 kb on + strand at 63.081 kb on + strand at 63.090 kb on + strand at 63.147 kb on + strand at 63.147 kb on + strand at 63.147 kb on + strand at 63.147 kb on + strand at 63.155 kb on - strand at 63.155 kb on - strand at 63.157 kb on + strand at 63.189 kb on - strand at 63.198 kb on + strand at 63.198 kb on + strand at 63.198 kb on + strand at 63.198 kb on + strand at 63.206 kb on - strand at 63.239 kb on - strand at 63.276 kb on - strand at 63.299 kb on - strand at 63.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 60,887 + CCNA_00059 0.60 -1.8 60,916 - CCNA_00059 0.65 -0.2 60,966 - CCNA_00059 0.73 -0.2 60,976 - CCNA_00059 0.75 +0.1 61,000 + CCNA_00059 0.79 +0.7 61,000 + CCNA_00059 0.79 -1.3 61,000 + CCNA_00059 0.79 -2.4 61,008 - CCNA_00059 0.81 -1.2 61,008 - CCNA_00059 0.81 +1.2 61,008 - CCNA_00059 0.81 -0.4 61,076 - -0.3 61,089 - +0.3 61,175 + -1.7 61,189 + -1.9 61,196 - +0.7 61,196 - -0.1 61,754 + -2.3 61,754 + -2.3 61,754 + -2.2 61,754 + -2.3 61,754 + +0.2 61,754 + -1.6 61,762 - +0.1 61,762 - +0.9 61,762 - +0.4 61,762 - -0.3 61,762 - +1.0 61,770 + -1.1 61,796 - +0.9 61,870 - +0.7 61,904 + -1.8 61,905 + +0.3 61,912 - -1.3 61,913 - -2.3 61,913 - -2.6 61,929 + -1.2 61,929 + -2.2 61,929 + -2.6 61,931 - -1.1 61,937 - -1.2 61,937 - -1.6 61,942 - -0.3 61,942 - -0.5 61,953 + +0.4 61,977 + -1.2 61,977 + -0.8 61,985 - -1.1 61,985 - -1.7 61,985 - -1.7 61,986 - -1.1 61,993 + +0.4 62,048 + CCNA_00061 0.13 -0.0 62,048 - CCNA_00061 0.13 -2.5 62,058 + CCNA_00061 0.14 -1.7 62,059 - CCNA_00061 0.14 -2.0 62,070 - CCNA_00061 0.15 +0.7 62,092 + CCNA_00061 0.16 -0.7 62,094 + CCNA_00061 0.16 -0.1 62,124 - CCNA_00061 0.19 -1.6 62,140 + CCNA_00061 0.20 -1.4 62,176 + CCNA_00061 0.23 -2.1 62,185 - CCNA_00061 0.24 -1.8 62,208 - CCNA_00061 0.25 -0.3 62,281 + CCNA_00061 0.31 -2.0 62,281 - CCNA_00061 0.31 -1.8 62,301 + CCNA_00061 0.33 +0.2 62,306 - CCNA_00061 0.33 -3.2 62,306 - CCNA_00061 0.33 -1.2 62,363 - CCNA_00061 0.38 -0.3 62,375 + CCNA_00061 0.39 -1.9 62,411 - CCNA_00061 0.41 -1.5 62,425 + CCNA_00061 0.43 -1.2 62,435 + CCNA_00061 0.43 +0.5 62,435 + CCNA_00061 0.43 -0.6 62,443 - CCNA_00061 0.44 -0.3 62,443 - CCNA_00061 0.44 -1.8 62,443 - CCNA_00061 0.44 -0.8 62,443 - CCNA_00061 0.44 +0.4 62,458 + CCNA_00061 0.45 -3.0 62,476 - CCNA_00061 0.47 -0.6 62,505 + CCNA_00061 0.49 -1.7 62,563 - CCNA_00061 0.53 -0.3 62,589 + CCNA_00061 0.55 -0.3 62,630 - CCNA_00061 0.59 -0.1 62,683 - CCNA_00061 0.63 +0.3 62,699 + CCNA_00061 0.64 +1.6 62,706 - CCNA_00061 0.65 -1.9 62,707 - CCNA_00061 0.65 -1.1 62,707 - CCNA_00061 0.65 -0.6 62,709 + CCNA_00061 0.65 -1.1 62,717 - CCNA_00061 0.66 -0.2 62,717 - CCNA_00061 0.66 +1.2 62,717 - CCNA_00061 0.66 -0.3 62,729 + CCNA_00061 0.67 -2.0 62,736 + CCNA_00061 0.67 +0.5 62,737 - CCNA_00061 0.67 -1.1 62,742 + CCNA_00061 0.68 -1.3 62,747 + CCNA_00061 0.68 -1.0 62,795 + CCNA_00061 0.72 -0.8 62,805 - CCNA_00061 0.72 -1.2 62,870 + CCNA_00061 0.78 +0.1 62,892 + CCNA_00061 0.79 -1.5 62,931 + CCNA_00061 0.82 -1.2 62,939 - CCNA_00061 0.83 +0.5 62,939 - CCNA_00061 0.83 +0.5 62,946 + CCNA_00061 0.84 +0.4 62,946 + CCNA_00061 0.84 -0.8 62,993 + CCNA_00061 0.87 -1.8 63,021 + CCNA_00061 0.90 +0.1 63,022 - CCNA_00061 0.90 -0.8 63,029 - +0.4 63,029 - -1.1 63,070 - -1.5 63,081 + -0.3 63,081 + -0.9 63,081 + +0.1 63,090 + -0.4 63,147 + -3.0 63,147 + +0.9 63,147 + +1.2 63,147 + +0.3 63,155 - +0.4 63,155 - -0.3 63,157 + -0.5 63,189 - -0.0 63,198 + +0.4 63,198 + +0.3 63,198 + +0.2 63,198 + -1.5 63,206 - +0.6 63,239 - +0.6 63,276 - -0.2 63,299 - +0.8 63,327 - +0.6
Or see this region's nucleotide sequence