Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0369 and BT0370 are separated by 119 nucleotides BT0370 and BT0371 are separated by 43 nucleotides
BT0369: BT0369 - endo-1,4-beta-xylanase D precursor (NCBI ptt file), at 454,356 to 455,321
BT0369
BT0370: BT0370 - galactokinase (NCBI ptt file), at 455,441 to 456,595
BT0370
BT0371: BT0371 - glucose/galactose transporter (NCBI ptt file), at 456,639 to 457,949
BT0371
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 454.512 kb on + strand, within BT0369 at 454.512 kb on + strand, within BT0369 at 454.513 kb on - strand, within BT0369 at 454.579 kb on + strand, within BT0369 at 454.702 kb on - strand, within BT0369 at 454.707 kb on + strand, within BT0369 at 454.754 kb on - strand, within BT0369 at 454.896 kb on + strand, within BT0369 at 454.903 kb on - strand, within BT0369 at 454.914 kb on + strand, within BT0369 at 454.923 kb on + strand, within BT0369 at 455.015 kb on + strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.016 kb on - strand, within BT0369 at 455.043 kb on + strand, within BT0369 at 455.043 kb on + strand, within BT0369 at 455.068 kb on + strand, within BT0369 at 455.088 kb on - strand, within BT0369 at 455.188 kb on - strand, within BT0369 at 455.262 kb on + strand at 455.263 kb on - strand at 455.266 kb on - strand at 455.331 kb on + strand at 455.339 kb on + strand at 455.348 kb on + strand at 455.370 kb on + strand at 455.474 kb on + strand at 455.474 kb on + strand at 455.475 kb on - strand at 455.475 kb on - strand at 455.483 kb on + strand at 455.483 kb on + strand at 455.483 kb on + strand at 455.484 kb on - strand at 455.573 kb on - strand, within BT0370 at 455.622 kb on + strand, within BT0370 at 455.622 kb on + strand, within BT0370 at 455.704 kb on - strand, within BT0370 at 455.718 kb on - strand, within BT0370 at 455.763 kb on - strand, within BT0370 at 455.784 kb on - strand, within BT0370 at 455.784 kb on - strand, within BT0370 at 455.800 kb on + strand, within BT0370 at 455.851 kb on + strand, within BT0370 at 455.979 kb on - strand, within BT0370 at 456.180 kb on - strand, within BT0370 at 456.198 kb on + strand, within BT0370 at 456.198 kb on + strand, within BT0370 at 456.203 kb on - strand, within BT0370 at 456.203 kb on - strand, within BT0370 at 456.229 kb on + strand, within BT0370 at 456.399 kb on + strand, within BT0370 at 456.400 kb on - strand, within BT0370 at 456.400 kb on - strand, within BT0370 at 456.408 kb on - strand, within BT0370 at 456.445 kb on + strand, within BT0370 at 456.445 kb on + strand, within BT0370 at 456.446 kb on - strand, within BT0370 at 456.532 kb on - strand at 456.534 kb on - strand at 456.535 kb on + strand at 456.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 454,512 + BT0369 0.16 +0.6 454,512 + BT0369 0.16 +0.2 454,513 - BT0369 0.16 -0.4 454,579 + BT0369 0.23 +0.0 454,702 - BT0369 0.36 +1.2 454,707 + BT0369 0.36 +2.1 454,754 - BT0369 0.41 +0.9 454,896 + BT0369 0.56 -1.1 454,903 - BT0369 0.57 -1.5 454,914 + BT0369 0.58 +0.1 454,923 + BT0369 0.59 +0.4 455,015 + BT0369 0.68 -0.5 455,016 - BT0369 0.68 +1.7 455,016 - +0.4 455,016 - BT0369 0.68 -1.5 455,016 - BT0369 0.68 +0.3 455,016 - BT0369 0.68 +0.6 455,043 + BT0369 0.71 -1.0 455,043 + BT0369 0.71 -0.1 455,068 + BT0369 0.74 +0.5 455,088 - BT0369 0.76 +0.7 455,188 - BT0369 0.86 -0.9 455,262 + +0.9 455,263 - -0.8 455,266 - -0.7 455,331 + -1.3 455,339 + +1.3 455,348 + +0.0 455,370 + +0.2 455,474 + +1.0 455,474 + -3.2 455,475 - -1.3 455,475 - -1.4 455,483 + -1.2 455,483 + -0.9 455,483 + -2.8 455,484 - -1.8 455,573 - BT0370 0.11 -1.3 455,622 + BT0370 0.16 -2.0 455,622 + BT0370 0.16 -2.0 455,704 - BT0370 0.23 -0.5 455,718 - BT0370 0.24 -1.5 455,763 - BT0370 0.28 -2.9 455,784 - BT0370 0.30 -1.4 455,784 - BT0370 0.30 +0.0 455,800 + BT0370 0.31 -3.0 455,851 + BT0370 0.35 -2.8 455,979 - BT0370 0.47 -3.0 456,180 - BT0370 0.64 -2.2 456,198 + BT0370 0.66 -0.3 456,198 + BT0370 0.66 -2.9 456,203 - BT0370 0.66 -3.4 456,203 - BT0370 0.66 -2.0 456,229 + BT0370 0.68 -1.8 456,399 + BT0370 0.83 -1.7 456,400 - BT0370 0.83 -1.1 456,400 - BT0370 0.83 -2.6 456,408 - BT0370 0.84 -1.6 456,445 + BT0370 0.87 -2.3 456,445 + BT0370 0.87 -1.8 456,446 - BT0370 0.87 -1.6 456,532 - -0.6 456,534 - -3.0 456,535 + -3.0 456,588 - +0.7
Or see this region's nucleotide sequence