Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS21050

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS21045 and RALBFv3_RS21050 are separated by 74 nucleotidesRALBFv3_RS21050 and RALBFv3_RS21055 are separated by 66 nucleotidesRALBFv3_RS21055 and RALBFv3_RS21060 are separated by 13 nucleotides RALBFv3_RS21045: RALBFv3_RS21045 - LysR family transcriptional regulator, at 1,434,993 to 1,435,973 _RS21045 RALBFv3_RS21050: RALBFv3_RS21050 - N-acetyltransferase, at 1,436,048 to 1,436,539 _RS21050 RALBFv3_RS21055: RALBFv3_RS21055 - chromate resistance protein, at 1,436,606 to 1,437,067 _RS21055 RALBFv3_RS21060: RALBFv3_RS21060 - chromate transporter, at 1,437,081 to 1,438,253 _RS21060 Position (kb) 1436 1437Strain fitness (log2 ratio) -1 0 1 2at 1435.108 kb on + strand, within RALBFv3_RS21045at 1435.108 kb on + strand, within RALBFv3_RS21045at 1435.191 kb on - strand, within RALBFv3_RS21045at 1435.348 kb on + strand, within RALBFv3_RS21045at 1435.348 kb on + strand, within RALBFv3_RS21045at 1435.348 kb on + strand, within RALBFv3_RS21045at 1435.409 kb on - strand, within RALBFv3_RS21045at 1435.409 kb on - strand, within RALBFv3_RS21045at 1435.409 kb on - strand, within RALBFv3_RS21045at 1435.409 kb on - strand, within RALBFv3_RS21045at 1435.409 kb on - strand, within RALBFv3_RS21045at 1435.409 kb on - strand, within RALBFv3_RS21045at 1435.534 kb on + strand, within RALBFv3_RS21045at 1435.534 kb on + strand, within RALBFv3_RS21045at 1435.534 kb on + strand, within RALBFv3_RS21045at 1435.535 kb on - strand, within RALBFv3_RS21045at 1435.552 kb on - strand, within RALBFv3_RS21045at 1435.643 kb on + strand, within RALBFv3_RS21045at 1435.935 kb on - strandat 1435.988 kb on - strandat 1436.099 kb on + strand, within RALBFv3_RS21050at 1436.099 kb on + strand, within RALBFv3_RS21050at 1436.100 kb on - strand, within RALBFv3_RS21050at 1436.100 kb on - strand, within RALBFv3_RS21050at 1436.120 kb on + strand, within RALBFv3_RS21050at 1436.121 kb on - strand, within RALBFv3_RS21050at 1436.174 kb on + strand, within RALBFv3_RS21050at 1436.280 kb on + strand, within RALBFv3_RS21050at 1436.453 kb on + strand, within RALBFv3_RS21050at 1436.475 kb on - strand, within RALBFv3_RS21050at 1436.537 kb on + strandat 1436.537 kb on + strandat 1436.538 kb on - strandat 1436.538 kb on - strandat 1436.668 kb on - strand, within RALBFv3_RS21055at 1436.679 kb on + strand, within RALBFv3_RS21055at 1436.680 kb on - strand, within RALBFv3_RS21055at 1436.751 kb on + strand, within RALBFv3_RS21055at 1436.791 kb on + strand, within RALBFv3_RS21055at 1436.792 kb on - strand, within RALBFv3_RS21055at 1436.850 kb on + strand, within RALBFv3_RS21055at 1436.850 kb on + strand, within RALBFv3_RS21055at 1436.850 kb on + strand, within RALBFv3_RS21055at 1436.850 kb on + strand, within RALBFv3_RS21055at 1436.850 kb on + strand, within RALBFv3_RS21055at 1436.850 kb on + strand, within RALBFv3_RS21055at 1436.919 kb on + strand, within RALBFv3_RS21055at 1436.920 kb on - strand, within RALBFv3_RS21055at 1436.954 kb on + strand, within RALBFv3_RS21055at 1436.954 kb on + strand, within RALBFv3_RS21055at 1436.954 kb on + strand, within RALBFv3_RS21055at 1436.973 kb on + strand, within RALBFv3_RS21055at 1436.973 kb on + strand, within RALBFv3_RS21055at 1436.973 kb on + strand, within RALBFv3_RS21055at 1436.974 kb on - strand, within RALBFv3_RS21055at 1437.100 kb on + strandat 1437.317 kb on - strand, within RALBFv3_RS21060at 1437.347 kb on + strand, within RALBFv3_RS21060at 1437.348 kb on - strand, within RALBFv3_RS21060at 1437.355 kb on + strand, within RALBFv3_RS21060at 1437.355 kb on + strand, within RALBFv3_RS21060at 1437.355 kb on + strand, within RALBFv3_RS21060at 1437.434 kb on + strand, within RALBFv3_RS21060at 1437.529 kb on + strand, within RALBFv3_RS21060at 1437.530 kb on - strand, within RALBFv3_RS21060

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,435,108 + RALBFv3_RS21045 0.12 -0.8
1,435,108 + RALBFv3_RS21045 0.12 +0.2
1,435,191 - RALBFv3_RS21045 0.20 -0.1
1,435,348 + RALBFv3_RS21045 0.36 -0.7
1,435,348 + RALBFv3_RS21045 0.36 -1.1
1,435,348 + RALBFv3_RS21045 0.36 -0.4
1,435,409 - RALBFv3_RS21045 0.42 +0.5
1,435,409 - RALBFv3_RS21045 0.42 +0.3
1,435,409 - RALBFv3_RS21045 0.42 -0.1
1,435,409 - RALBFv3_RS21045 0.42 -0.3
1,435,409 - RALBFv3_RS21045 0.42 -0.2
1,435,409 - RALBFv3_RS21045 0.42 -1.2
1,435,534 + RALBFv3_RS21045 0.55 +0.8
1,435,534 + RALBFv3_RS21045 0.55 +1.9
1,435,534 + RALBFv3_RS21045 0.55 +0.1
1,435,535 - RALBFv3_RS21045 0.55 +1.4
1,435,552 - RALBFv3_RS21045 0.57 +0.2
1,435,643 + RALBFv3_RS21045 0.66 -0.1
1,435,935 - +2.4
1,435,988 - -0.8
1,436,099 + RALBFv3_RS21050 0.10 +1.1
1,436,099 + RALBFv3_RS21050 0.10 +0.4
1,436,100 - RALBFv3_RS21050 0.11 -0.1
1,436,100 - RALBFv3_RS21050 0.11 +0.3
1,436,120 + RALBFv3_RS21050 0.15 -0.7
1,436,121 - RALBFv3_RS21050 0.15 -0.1
1,436,174 + RALBFv3_RS21050 0.26 +0.7
1,436,280 + RALBFv3_RS21050 0.47 -0.4
1,436,453 + RALBFv3_RS21050 0.82 +0.7
1,436,475 - RALBFv3_RS21050 0.87 +1.1
1,436,537 + -0.6
1,436,537 + +0.6
1,436,538 - -0.7
1,436,538 - -0.5
1,436,668 - RALBFv3_RS21055 0.13 -0.3
1,436,679 + RALBFv3_RS21055 0.16 -0.1
1,436,680 - RALBFv3_RS21055 0.16 -1.0
1,436,751 + RALBFv3_RS21055 0.31 +0.2
1,436,791 + RALBFv3_RS21055 0.40 -0.2
1,436,792 - RALBFv3_RS21055 0.40 +0.5
1,436,850 + RALBFv3_RS21055 0.53 -1.0
1,436,850 + RALBFv3_RS21055 0.53 +0.8
1,436,850 + RALBFv3_RS21055 0.53 -0.2
1,436,850 + RALBFv3_RS21055 0.53 +0.3
1,436,850 + RALBFv3_RS21055 0.53 +0.1
1,436,850 + RALBFv3_RS21055 0.53 -0.1
1,436,919 + RALBFv3_RS21055 0.68 -0.6
1,436,920 - RALBFv3_RS21055 0.68 -0.5
1,436,954 + RALBFv3_RS21055 0.75 -1.4
1,436,954 + RALBFv3_RS21055 0.75 +0.6
1,436,954 + RALBFv3_RS21055 0.75 -0.3
1,436,973 + RALBFv3_RS21055 0.79 -0.9
1,436,973 + RALBFv3_RS21055 0.79 -0.5
1,436,973 + RALBFv3_RS21055 0.79 -1.2
1,436,974 - RALBFv3_RS21055 0.80 -0.3
1,437,100 + +0.1
1,437,317 - RALBFv3_RS21060 0.20 -0.8
1,437,347 + RALBFv3_RS21060 0.23 +0.5
1,437,348 - RALBFv3_RS21060 0.23 -0.2
1,437,355 + RALBFv3_RS21060 0.23 -0.4
1,437,355 + RALBFv3_RS21060 0.23 -0.2
1,437,355 + RALBFv3_RS21060 0.23 -1.2
1,437,434 + RALBFv3_RS21060 0.30 +0.3
1,437,529 + RALBFv3_RS21060 0.38 -0.4
1,437,530 - RALBFv3_RS21060 0.38 +0.2

Or see this region's nucleotide sequence