Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18615 and RALBFv3_RS18620 are separated by 99 nucleotides RALBFv3_RS18620 and RALBFv3_RS18625 are separated by 45 nucleotides RALBFv3_RS18625 and RALBFv3_RS24390 are separated by 99 nucleotides
RALBFv3_RS18615: RALBFv3_RS18615 - IS21 family transposase, at 710,916 to 711,932
_RS18615
RALBFv3_RS18620: RALBFv3_RS18620 - alpha/beta hydrolase, at 712,032 to 713,018
_RS18620
RALBFv3_RS18625: RALBFv3_RS18625 - heavy metal-responsive transcriptional regulator, at 713,064 to 713,441
_RS18625
RALBFv3_RS24390: RALBFv3_RS24390 - NAD(P)-dependent oxidoreductase, at 713,541 to 714,458
_RS24390
Position (kb) 712
713
714 Strain fitness (log2 ratio) -1
0
1 at 712.008 kb on + strand at 712.314 kb on + strand, within RALBFv3_RS18620 at 712.315 kb on - strand, within RALBFv3_RS18620 at 712.328 kb on - strand, within RALBFv3_RS18620 at 712.354 kb on - strand, within RALBFv3_RS18620 at 712.576 kb on + strand, within RALBFv3_RS18620 at 712.611 kb on + strand, within RALBFv3_RS18620 at 712.611 kb on + strand, within RALBFv3_RS18620 at 712.612 kb on - strand, within RALBFv3_RS18620 at 712.612 kb on - strand, within RALBFv3_RS18620 at 712.659 kb on + strand, within RALBFv3_RS18620 at 712.659 kb on + strand, within RALBFv3_RS18620 at 712.659 kb on + strand, within RALBFv3_RS18620 at 712.660 kb on - strand, within RALBFv3_RS18620 at 712.660 kb on - strand, within RALBFv3_RS18620 at 712.682 kb on - strand, within RALBFv3_RS18620 at 712.737 kb on + strand, within RALBFv3_RS18620 at 712.737 kb on + strand, within RALBFv3_RS18620 at 712.738 kb on - strand, within RALBFv3_RS18620 at 712.764 kb on + strand, within RALBFv3_RS18620 at 712.764 kb on + strand, within RALBFv3_RS18620 at 712.764 kb on + strand, within RALBFv3_RS18620 at 712.764 kb on + strand, within RALBFv3_RS18620 at 712.765 kb on - strand, within RALBFv3_RS18620 at 712.796 kb on - strand, within RALBFv3_RS18620 at 712.796 kb on - strand, within RALBFv3_RS18620 at 712.948 kb on + strand at 712.949 kb on - strand at 712.959 kb on + strand at 712.975 kb on + strand at 712.976 kb on - strand at 712.976 kb on - strand at 713.019 kb on + strand at 713.020 kb on - strand at 713.020 kb on - strand at 713.020 kb on - strand at 713.100 kb on + strand at 713.229 kb on + strand, within RALBFv3_RS18625 at 713.229 kb on + strand, within RALBFv3_RS18625 at 713.229 kb on + strand, within RALBFv3_RS18625 at 713.229 kb on + strand, within RALBFv3_RS18625 at 713.230 kb on - strand, within RALBFv3_RS18625 at 713.230 kb on - strand, within RALBFv3_RS18625 at 713.304 kb on + strand, within RALBFv3_RS18625 at 713.320 kb on + strand, within RALBFv3_RS18625 at 713.329 kb on + strand, within RALBFv3_RS18625 at 713.329 kb on + strand, within RALBFv3_RS18625 at 713.330 kb on - strand, within RALBFv3_RS18625 at 713.330 kb on - strand, within RALBFv3_RS18625 at 713.333 kb on + strand, within RALBFv3_RS18625 at 713.333 kb on + strand, within RALBFv3_RS18625 at 713.334 kb on - strand, within RALBFv3_RS18625 at 713.383 kb on + strand, within RALBFv3_RS18625 at 713.384 kb on - strand, within RALBFv3_RS18625 at 713.386 kb on + strand, within RALBFv3_RS18625 at 713.386 kb on + strand, within RALBFv3_RS18625 at 713.601 kb on - strand at 713.620 kb on - strand at 713.709 kb on + strand, within RALBFv3_RS24390 at 713.710 kb on - strand, within RALBFv3_RS24390 at 713.810 kb on - strand, within RALBFv3_RS24390 at 714.003 kb on + strand, within RALBFv3_RS24390 at 714.003 kb on + strand, within RALBFv3_RS24390 at 714.003 kb on + strand, within RALBFv3_RS24390 at 714.003 kb on + strand, within RALBFv3_RS24390 at 714.004 kb on - strand, within RALBFv3_RS24390 at 714.004 kb on - strand, within RALBFv3_RS24390 at 714.004 kb on - strand, within RALBFv3_RS24390 at 714.004 kb on - strand, within RALBFv3_RS24390 at 714.004 kb on - strand, within RALBFv3_RS24390 at 714.004 kb on - strand, within RALBFv3_RS24390 at 714.004 kb on - strand, within RALBFv3_RS24390 at 714.004 kb on - strand, within RALBFv3_RS24390 at 714.005 kb on + strand, within RALBFv3_RS24390 at 714.016 kb on - strand, within RALBFv3_RS24390 at 714.016 kb on - strand, within RALBFv3_RS24390 at 714.016 kb on - strand, within RALBFv3_RS24390
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 712,008 + +1.6 712,314 + RALBFv3_RS18620 0.29 -0.7 712,315 - RALBFv3_RS18620 0.29 -1.2 712,328 - RALBFv3_RS18620 0.30 -0.5 712,354 - RALBFv3_RS18620 0.33 -0.8 712,576 + RALBFv3_RS18620 0.55 -0.9 712,611 + RALBFv3_RS18620 0.59 -0.3 712,611 + RALBFv3_RS18620 0.59 -0.3 712,612 - RALBFv3_RS18620 0.59 -0.3 712,612 - RALBFv3_RS18620 0.59 +0.1 712,659 + RALBFv3_RS18620 0.64 +1.5 712,659 + RALBFv3_RS18620 0.64 -1.2 712,659 + RALBFv3_RS18620 0.64 +0.5 712,660 - RALBFv3_RS18620 0.64 -0.1 712,660 - RALBFv3_RS18620 0.64 +0.4 712,682 - RALBFv3_RS18620 0.66 -0.4 712,737 + RALBFv3_RS18620 0.71 -0.8 712,737 + RALBFv3_RS18620 0.71 -0.7 712,738 - RALBFv3_RS18620 0.72 +1.2 712,764 + RALBFv3_RS18620 0.74 +1.3 712,764 + RALBFv3_RS18620 0.74 +0.2 712,764 + RALBFv3_RS18620 0.74 +0.2 712,764 + RALBFv3_RS18620 0.74 +0.2 712,765 - RALBFv3_RS18620 0.74 -0.1 712,796 - RALBFv3_RS18620 0.77 -0.1 712,796 - RALBFv3_RS18620 0.77 +1.4 712,948 + -0.9 712,949 - -0.4 712,959 + -0.4 712,975 + +0.2 712,976 - -0.2 712,976 - -0.8 713,019 + -0.4 713,020 - -0.6 713,020 - +0.0 713,020 - -0.7 713,100 + -0.7 713,229 + RALBFv3_RS18625 0.44 -0.1 713,229 + RALBFv3_RS18625 0.44 +0.7 713,229 + RALBFv3_RS18625 0.44 +1.2 713,229 + RALBFv3_RS18625 0.44 -0.1 713,230 - RALBFv3_RS18625 0.44 -0.4 713,230 - RALBFv3_RS18625 0.44 +0.8 713,304 + RALBFv3_RS18625 0.63 -1.2 713,320 + RALBFv3_RS18625 0.68 +0.1 713,329 + RALBFv3_RS18625 0.70 +0.1 713,329 + RALBFv3_RS18625 0.70 -0.6 713,330 - RALBFv3_RS18625 0.70 -0.1 713,330 - RALBFv3_RS18625 0.70 -0.5 713,333 + RALBFv3_RS18625 0.71 -0.2 713,333 + RALBFv3_RS18625 0.71 -0.5 713,334 - RALBFv3_RS18625 0.71 +1.1 713,383 + RALBFv3_RS18625 0.84 -0.4 713,384 - RALBFv3_RS18625 0.85 -1.3 713,386 + RALBFv3_RS18625 0.85 +0.8 713,386 + RALBFv3_RS18625 0.85 -0.5 713,601 - +0.3 713,620 - -0.7 713,709 + RALBFv3_RS24390 0.18 -0.2 713,710 - RALBFv3_RS24390 0.18 -0.5 713,810 - RALBFv3_RS24390 0.29 +0.6 714,003 + RALBFv3_RS24390 0.50 -0.7 714,003 + RALBFv3_RS24390 0.50 -0.5 714,003 + RALBFv3_RS24390 0.50 +0.8 714,003 + RALBFv3_RS24390 0.50 -1.1 714,004 - RALBFv3_RS24390 0.50 +0.3 714,004 - RALBFv3_RS24390 0.50 +0.5 714,004 - RALBFv3_RS24390 0.50 -0.7 714,004 - RALBFv3_RS24390 0.50 +0.6 714,004 - RALBFv3_RS24390 0.50 -0.3 714,004 - RALBFv3_RS24390 0.50 +0.5 714,004 - RALBFv3_RS24390 0.50 -0.2 714,004 - RALBFv3_RS24390 0.50 -0.6 714,005 + RALBFv3_RS24390 0.51 +1.4 714,016 - RALBFv3_RS24390 0.52 +0.1 714,016 - RALBFv3_RS24390 0.52 -0.5 714,016 - RALBFv3_RS24390 0.52 +0.1
Or see this region's nucleotide sequence