Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16340

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS16335 and RALBFv3_RS16340 are separated by 459 nucleotidesRALBFv3_RS16340 and RALBFv3_RS24155 are separated by 160 nucleotidesRALBFv3_RS24155 and RALBFv3_RS16345 are separated by 344 nucleotides RALBFv3_RS16335: RALBFv3_RS16335 - LysR family transcriptional regulator, at 120,667 to 121,641 _RS16335 RALBFv3_RS16340: RALBFv3_RS16340 - secreted protein popf2, at 122,101 to 123,864 _RS16340 RALBFv3_RS24155: RALBFv3_RS24155 - hypothetical protein, at 124,025 to 124,384 _RS24155 RALBFv3_RS16345: RALBFv3_RS16345 - cytochrome c oxidase subunit IV, at 124,729 to 125,070 _RS16345 Position (kb) 122 123 124Strain fitness (log2 ratio) -2 -1 0 1 2at 121.102 kb on - strand, within RALBFv3_RS16335at 121.112 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.115 kb on - strand, within RALBFv3_RS16335at 121.115 kb on - strand, within RALBFv3_RS16335at 121.116 kb on + strand, within RALBFv3_RS16335at 121.116 kb on - strand, within RALBFv3_RS16335at 121.167 kb on + strand, within RALBFv3_RS16335at 121.167 kb on + strand, within RALBFv3_RS16335at 121.168 kb on - strand, within RALBFv3_RS16335at 121.168 kb on - strand, within RALBFv3_RS16335at 121.243 kb on + strand, within RALBFv3_RS16335at 121.243 kb on + strand, within RALBFv3_RS16335at 121.366 kb on + strand, within RALBFv3_RS16335at 121.367 kb on - strand, within RALBFv3_RS16335at 121.367 kb on - strand, within RALBFv3_RS16335at 121.480 kb on + strand, within RALBFv3_RS16335at 121.481 kb on - strand, within RALBFv3_RS16335at 121.481 kb on - strand, within RALBFv3_RS16335at 121.696 kb on + strandat 121.696 kb on + strandat 121.696 kb on + strandat 121.697 kb on - strandat 121.697 kb on - strandat 121.697 kb on - strandat 121.701 kb on + strandat 121.701 kb on + strandat 121.701 kb on + strandat 121.701 kb on + strandat 121.702 kb on - strandat 121.702 kb on - strandat 121.702 kb on - strandat 121.866 kb on - strandat 121.872 kb on + strandat 121.872 kb on + strandat 121.872 kb on + strandat 121.873 kb on - strandat 121.963 kb on - strandat 122.126 kb on + strandat 122.126 kb on + strandat 122.126 kb on + strandat 122.126 kb on + strandat 122.126 kb on + strandat 122.127 kb on - strandat 122.127 kb on - strandat 122.127 kb on - strandat 122.127 kb on - strandat 122.142 kb on + strandat 122.222 kb on - strandat 122.222 kb on - strandat 122.222 kb on - strandat 122.560 kb on + strand, within RALBFv3_RS16340at 122.560 kb on + strand, within RALBFv3_RS16340at 122.560 kb on + strand, within RALBFv3_RS16340at 122.561 kb on - strand, within RALBFv3_RS16340at 122.561 kb on - strand, within RALBFv3_RS16340at 122.561 kb on - strand, within RALBFv3_RS16340at 122.681 kb on - strand, within RALBFv3_RS16340at 122.692 kb on + strand, within RALBFv3_RS16340at 122.692 kb on + strand, within RALBFv3_RS16340at 122.692 kb on + strand, within RALBFv3_RS16340at 122.692 kb on + strand, within RALBFv3_RS16340at 122.692 kb on + strand, within RALBFv3_RS16340at 122.692 kb on + strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.693 kb on - strand, within RALBFv3_RS16340at 122.764 kb on + strand, within RALBFv3_RS16340at 122.764 kb on + strand, within RALBFv3_RS16340at 122.764 kb on + strand, within RALBFv3_RS16340at 122.764 kb on + strand, within RALBFv3_RS16340at 122.764 kb on + strand, within RALBFv3_RS16340at 122.765 kb on - strand, within RALBFv3_RS16340at 122.765 kb on - strand, within RALBFv3_RS16340at 122.765 kb on - strand, within RALBFv3_RS16340at 122.765 kb on - strand, within RALBFv3_RS16340at 122.765 kb on - strand, within RALBFv3_RS16340at 122.765 kb on - strand, within RALBFv3_RS16340at 122.765 kb on - strand, within RALBFv3_RS16340at 122.770 kb on + strand, within RALBFv3_RS16340at 122.771 kb on - strand, within RALBFv3_RS16340at 122.771 kb on - strand, within RALBFv3_RS16340at 122.878 kb on + strand, within RALBFv3_RS16340at 122.878 kb on + strand, within RALBFv3_RS16340at 122.879 kb on - strand, within RALBFv3_RS16340at 122.879 kb on - strand, within RALBFv3_RS16340at 123.191 kb on + strand, within RALBFv3_RS16340at 123.213 kb on + strand, within RALBFv3_RS16340at 123.213 kb on + strand, within RALBFv3_RS16340at 123.213 kb on + strand, within RALBFv3_RS16340at 123.213 kb on + strand, within RALBFv3_RS16340at 123.214 kb on - strand, within RALBFv3_RS16340at 123.214 kb on - strand, within RALBFv3_RS16340at 123.214 kb on - strand, within RALBFv3_RS16340at 123.259 kb on + strand, within RALBFv3_RS16340at 123.259 kb on + strand, within RALBFv3_RS16340at 123.757 kb on + strandat 123.769 kb on + strandat 123.769 kb on + strandat 123.769 kb on + strandat 123.769 kb on + strandat 123.769 kb on + strandat 123.769 kb on + strandat 123.770 kb on - strandat 123.770 kb on - strandat 123.826 kb on + strandat 123.827 kb on - strandat 123.827 kb on - strandat 123.862 kb on + strandat 123.863 kb on - strandat 123.863 kb on - strandat 123.915 kb on + strandat 123.915 kb on + strandat 123.916 kb on - strandat 123.916 kb on - strandat 123.916 kb on - strandat 123.983 kb on + strandat 123.983 kb on + strandat 123.983 kb on + strandat 123.984 kb on - strandat 123.984 kb on - strandat 124.000 kb on - strandat 124.000 kb on - strandat 124.108 kb on + strand, within RALBFv3_RS24155at 124.213 kb on - strand, within RALBFv3_RS24155at 124.285 kb on + strand, within RALBFv3_RS24155at 124.285 kb on + strand, within RALBFv3_RS24155at 124.291 kb on + strand, within RALBFv3_RS24155at 124.292 kb on + strand, within RALBFv3_RS24155at 124.292 kb on + strand, within RALBFv3_RS24155at 124.293 kb on - strand, within RALBFv3_RS24155at 124.293 kb on - strand, within RALBFv3_RS24155at 124.293 kb on - strand, within RALBFv3_RS24155at 124.361 kb on + strandat 124.362 kb on - strandat 124.377 kb on + strandat 124.426 kb on + strandat 124.458 kb on - strandat 124.506 kb on - strandat 124.628 kb on + strandat 124.629 kb on - strandat 124.646 kb on + strandat 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.829 kb on + strand, within RALBFv3_RS16345at 124.830 kb on - strand, within RALBFv3_RS16345at 124.830 kb on - strand, within RALBFv3_RS16345

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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121,102 - RALBFv3_RS16335 0.45 -0.1
121,112 + RALBFv3_RS16335 0.46 -1.0
121,114 + RALBFv3_RS16335 0.46 +0.0
121,114 + RALBFv3_RS16335 0.46 +1.7
121,114 + RALBFv3_RS16335 0.46 -0.4
121,114 + RALBFv3_RS16335 0.46 +1.0
121,114 + RALBFv3_RS16335 0.46 +0.3
121,115 - RALBFv3_RS16335 0.46 -1.8
121,115 - RALBFv3_RS16335 0.46 +1.7
121,116 + RALBFv3_RS16335 0.46 -0.8
121,116 - RALBFv3_RS16335 0.46 -0.1
121,167 + RALBFv3_RS16335 0.51 -0.7
121,167 + RALBFv3_RS16335 0.51 +0.6
121,168 - RALBFv3_RS16335 0.51 +1.1
121,168 - RALBFv3_RS16335 0.51 -0.0
121,243 + RALBFv3_RS16335 0.59 -0.2
121,243 + RALBFv3_RS16335 0.59 +1.0
121,366 + RALBFv3_RS16335 0.72 +0.5
121,367 - RALBFv3_RS16335 0.72 -1.4
121,367 - RALBFv3_RS16335 0.72 +1.8
121,480 + RALBFv3_RS16335 0.83 -0.3
121,481 - RALBFv3_RS16335 0.83 -0.1
121,481 - RALBFv3_RS16335 0.83 -1.8
121,696 + -0.1
121,696 + -1.0
121,696 + +0.2
121,697 - +0.3
121,697 - -0.5
121,697 - -1.3
121,701 + +0.7
121,701 + +0.6
121,701 + -0.4
121,701 + -0.1
121,702 - +0.4
121,702 - +1.4
121,702 - -0.4
121,866 - +0.2
121,872 + +0.6
121,872 + -0.0
121,872 + -1.7
121,873 - -0.2
121,963 - +0.9
122,126 + -0.5
122,126 + -1.0
122,126 + +1.2
122,126 + +0.3
122,126 + +0.0
122,127 - -0.6
122,127 - -0.1
122,127 - +0.2
122,127 - -0.6
122,142 + +1.9
122,222 - -0.8
122,222 - -0.6
122,222 - +1.1
122,560 + RALBFv3_RS16340 0.26 +0.3
122,560 + RALBFv3_RS16340 0.26 +0.4
122,560 + RALBFv3_RS16340 0.26 -0.9
122,561 - RALBFv3_RS16340 0.26 -1.1
122,561 - RALBFv3_RS16340 0.26 -0.5
122,561 - RALBFv3_RS16340 0.26 -0.4
122,681 - RALBFv3_RS16340 0.33 -1.5
122,692 + RALBFv3_RS16340 0.34 -0.3
122,692 + RALBFv3_RS16340 0.34 -0.3
122,692 + RALBFv3_RS16340 0.34 +0.7
122,692 + RALBFv3_RS16340 0.34 +0.7
122,692 + RALBFv3_RS16340 0.34 +0.9
122,692 + RALBFv3_RS16340 0.34 -0.7
122,693 - RALBFv3_RS16340 0.34 +0.7
122,693 - RALBFv3_RS16340 0.34 +0.6
122,693 - RALBFv3_RS16340 0.34 -0.6
122,693 - RALBFv3_RS16340 0.34 -1.0
122,693 - RALBFv3_RS16340 0.34 +1.1
122,693 - RALBFv3_RS16340 0.34 -0.9
122,693 - RALBFv3_RS16340 0.34 -0.3
122,693 - RALBFv3_RS16340 0.34 -1.7
122,693 - RALBFv3_RS16340 0.34 -0.5
122,693 - RALBFv3_RS16340 0.34 +1.1
122,764 + RALBFv3_RS16340 0.38 -0.8
122,764 + RALBFv3_RS16340 0.38 -0.1
122,764 + RALBFv3_RS16340 0.38 +0.2
122,764 + RALBFv3_RS16340 0.38 -0.4
122,764 + RALBFv3_RS16340 0.38 -0.9
122,765 - RALBFv3_RS16340 0.38 -0.2
122,765 - RALBFv3_RS16340 0.38 +0.2
122,765 - RALBFv3_RS16340 0.38 -1.0
122,765 - RALBFv3_RS16340 0.38 -0.5
122,765 - RALBFv3_RS16340 0.38 +1.3
122,765 - RALBFv3_RS16340 0.38 -0.9
122,765 - RALBFv3_RS16340 0.38 -0.6
122,770 + RALBFv3_RS16340 0.38 +0.1
122,771 - RALBFv3_RS16340 0.38 +0.4
122,771 - RALBFv3_RS16340 0.38 +0.2
122,878 + RALBFv3_RS16340 0.44 -0.2
122,878 + RALBFv3_RS16340 0.44 +0.3
122,879 - RALBFv3_RS16340 0.44 +2.2
122,879 - RALBFv3_RS16340 0.44 +0.9
123,191 + RALBFv3_RS16340 0.62 -0.4
123,213 + RALBFv3_RS16340 0.63 +0.9
123,213 + RALBFv3_RS16340 0.63 -0.1
123,213 + RALBFv3_RS16340 0.63 +0.1
123,213 + RALBFv3_RS16340 0.63 +0.8
123,214 - RALBFv3_RS16340 0.63 +0.4
123,214 - RALBFv3_RS16340 0.63 +0.1
123,214 - RALBFv3_RS16340 0.63 +0.3
123,259 + RALBFv3_RS16340 0.66 -1.1
123,259 + RALBFv3_RS16340 0.66 +0.1
123,757 + -1.3
123,769 + -1.2
123,769 + +0.3
123,769 + -0.6
123,769 + -0.8
123,769 + +0.5
123,769 + +0.0
123,770 - +1.3
123,770 - -1.3
123,826 + -0.4
123,827 - -0.7
123,827 - +1.7
123,862 + +0.5
123,863 - +0.6
123,863 - +0.3
123,915 + +0.3
123,915 + -0.2
123,916 - +0.3
123,916 - -0.3
123,916 - +0.3
123,983 + +0.0
123,983 + +0.1
123,983 + +0.3
123,984 - +0.2
123,984 - -0.2
124,000 - -1.1
124,000 - +0.9
124,108 + RALBFv3_RS24155 0.23 -0.7
124,213 - RALBFv3_RS24155 0.52 +1.4
124,285 + RALBFv3_RS24155 0.72 +0.1
124,285 + RALBFv3_RS24155 0.72 +0.8
124,291 + RALBFv3_RS24155 0.74 +2.2
124,292 + RALBFv3_RS24155 0.74 -1.1
124,292 + RALBFv3_RS24155 0.74 -0.9
124,293 - RALBFv3_RS24155 0.74 -0.6
124,293 - RALBFv3_RS24155 0.74 +0.6
124,293 - RALBFv3_RS24155 0.74 +0.1
124,361 + +0.0
124,362 - -0.8
124,377 + +0.9
124,426 + +1.5
124,458 - +1.1
124,506 - -0.7
124,628 + +0.1
124,629 - -0.5
124,646 + -0.8
124,829 + RALBFv3_RS16345 0.29 +0.1
124,829 + RALBFv3_RS16345 0.29 -0.5
124,829 + RALBFv3_RS16345 0.29 +0.4
124,829 + RALBFv3_RS16345 0.29 +0.2
124,829 + RALBFv3_RS16345 0.29 -0.5
124,829 + RALBFv3_RS16345 0.29 +0.7
124,830 - RALBFv3_RS16345 0.30 -1.2
124,830 - RALBFv3_RS16345 0.30 -0.2

Or see this region's nucleotide sequence