Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16335

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS16330 and RALBFv3_RS16335 are separated by 279 nucleotidesRALBFv3_RS16335 and RALBFv3_RS16340 are separated by 459 nucleotides RALBFv3_RS16330: RALBFv3_RS16330 - MFS transporter, at 119,086 to 120,387 _RS16330 RALBFv3_RS16335: RALBFv3_RS16335 - LysR family transcriptional regulator, at 120,667 to 121,641 _RS16335 RALBFv3_RS16340: RALBFv3_RS16340 - secreted protein popf2, at 122,101 to 123,864 _RS16340 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 119.769 kb on - strand, within RALBFv3_RS16330at 119.774 kb on + strand, within RALBFv3_RS16330at 119.774 kb on + strand, within RALBFv3_RS16330at 119.774 kb on + strand, within RALBFv3_RS16330at 119.774 kb on + strand, within RALBFv3_RS16330at 119.774 kb on + strand, within RALBFv3_RS16330at 119.774 kb on + strand, within RALBFv3_RS16330at 119.774 kb on + strand, within RALBFv3_RS16330at 119.774 kb on + strand, within RALBFv3_RS16330at 119.775 kb on - strand, within RALBFv3_RS16330at 119.775 kb on - strand, within RALBFv3_RS16330at 119.961 kb on - strand, within RALBFv3_RS16330at 119.961 kb on - strand, within RALBFv3_RS16330at 119.975 kb on + strand, within RALBFv3_RS16330at 119.975 kb on + strand, within RALBFv3_RS16330at 119.975 kb on + strand, within RALBFv3_RS16330at 119.976 kb on - strand, within RALBFv3_RS16330at 119.976 kb on - strand, within RALBFv3_RS16330at 119.978 kb on + strand, within RALBFv3_RS16330at 119.978 kb on + strand, within RALBFv3_RS16330at 119.978 kb on + strand, within RALBFv3_RS16330at 119.978 kb on + strand, within RALBFv3_RS16330at 119.978 kb on + strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 119.979 kb on - strand, within RALBFv3_RS16330at 120.035 kb on + strand, within RALBFv3_RS16330at 120.036 kb on - strand, within RALBFv3_RS16330at 120.036 kb on - strand, within RALBFv3_RS16330at 120.036 kb on - strand, within RALBFv3_RS16330at 120.166 kb on - strand, within RALBFv3_RS16330at 120.166 kb on - strand, within RALBFv3_RS16330at 120.168 kb on - strand, within RALBFv3_RS16330at 120.168 kb on - strand, within RALBFv3_RS16330at 120.272 kb on + strandat 120.285 kb on - strandat 120.285 kb on - strandat 120.411 kb on - strandat 120.432 kb on + strandat 120.445 kb on + strandat 120.445 kb on + strandat 120.446 kb on - strandat 120.446 kb on - strandat 120.462 kb on - strandat 120.487 kb on - strandat 120.555 kb on - strandat 120.621 kb on - strandat 120.622 kb on + strandat 120.670 kb on + strandat 120.670 kb on + strandat 120.671 kb on - strandat 120.778 kb on + strand, within RALBFv3_RS16335at 120.861 kb on + strand, within RALBFv3_RS16335at 120.862 kb on + strand, within RALBFv3_RS16335at 120.862 kb on + strand, within RALBFv3_RS16335at 120.863 kb on - strand, within RALBFv3_RS16335at 120.863 kb on - strand, within RALBFv3_RS16335at 120.863 kb on - strand, within RALBFv3_RS16335at 120.875 kb on - strand, within RALBFv3_RS16335at 121.001 kb on + strand, within RALBFv3_RS16335at 121.001 kb on + strand, within RALBFv3_RS16335at 121.001 kb on + strand, within RALBFv3_RS16335at 121.001 kb on + strand, within RALBFv3_RS16335at 121.001 kb on + strand, within RALBFv3_RS16335at 121.001 kb on + strand, within RALBFv3_RS16335at 121.001 kb on + strand, within RALBFv3_RS16335at 121.002 kb on - strand, within RALBFv3_RS16335at 121.002 kb on - strand, within RALBFv3_RS16335at 121.002 kb on - strand, within RALBFv3_RS16335at 121.002 kb on - strand, within RALBFv3_RS16335at 121.025 kb on - strand, within RALBFv3_RS16335at 121.102 kb on - strand, within RALBFv3_RS16335at 121.112 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.114 kb on + strand, within RALBFv3_RS16335at 121.115 kb on - strand, within RALBFv3_RS16335at 121.115 kb on - strand, within RALBFv3_RS16335at 121.116 kb on + strand, within RALBFv3_RS16335at 121.116 kb on - strand, within RALBFv3_RS16335at 121.167 kb on + strand, within RALBFv3_RS16335at 121.167 kb on + strand, within RALBFv3_RS16335at 121.168 kb on - strand, within RALBFv3_RS16335at 121.168 kb on - strand, within RALBFv3_RS16335at 121.243 kb on + strand, within RALBFv3_RS16335at 121.243 kb on + strand, within RALBFv3_RS16335at 121.366 kb on + strand, within RALBFv3_RS16335at 121.367 kb on - strand, within RALBFv3_RS16335at 121.367 kb on - strand, within RALBFv3_RS16335at 121.480 kb on + strand, within RALBFv3_RS16335at 121.481 kb on - strand, within RALBFv3_RS16335at 121.481 kb on - strand, within RALBFv3_RS16335at 121.696 kb on + strandat 121.696 kb on + strandat 121.696 kb on + strandat 121.697 kb on - strandat 121.697 kb on - strandat 121.697 kb on - strandat 121.701 kb on + strandat 121.701 kb on + strandat 121.701 kb on + strandat 121.701 kb on + strandat 121.702 kb on - strandat 121.702 kb on - strandat 121.702 kb on - strandat 121.866 kb on - strandat 121.872 kb on + strandat 121.872 kb on + strandat 121.872 kb on + strandat 121.873 kb on - strandat 121.963 kb on - strandat 122.126 kb on + strandat 122.126 kb on + strandat 122.126 kb on + strandat 122.126 kb on + strandat 122.126 kb on + strandat 122.127 kb on - strandat 122.127 kb on - strandat 122.127 kb on - strandat 122.127 kb on - strandat 122.142 kb on + strandat 122.222 kb on - strandat 122.222 kb on - strandat 122.222 kb on - strandat 122.560 kb on + strand, within RALBFv3_RS16340at 122.560 kb on + strand, within RALBFv3_RS16340at 122.560 kb on + strand, within RALBFv3_RS16340at 122.561 kb on - strand, within RALBFv3_RS16340at 122.561 kb on - strand, within RALBFv3_RS16340at 122.561 kb on - strand, within RALBFv3_RS16340

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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119,769 - RALBFv3_RS16330 0.52 -1.4
119,774 + RALBFv3_RS16330 0.53 -0.9
119,774 + RALBFv3_RS16330 0.53 +0.6
119,774 + RALBFv3_RS16330 0.53 -1.0
119,774 + RALBFv3_RS16330 0.53 +0.2
119,774 + RALBFv3_RS16330 0.53 +0.0
119,774 + RALBFv3_RS16330 0.53 -1.1
119,774 + RALBFv3_RS16330 0.53 -0.3
119,774 + RALBFv3_RS16330 0.53 +0.4
119,775 - RALBFv3_RS16330 0.53 +0.1
119,775 - RALBFv3_RS16330 0.53 -1.0
119,961 - RALBFv3_RS16330 0.67 -0.8
119,961 - RALBFv3_RS16330 0.67 -0.2
119,975 + RALBFv3_RS16330 0.68 -0.3
119,975 + RALBFv3_RS16330 0.68 +0.0
119,975 + RALBFv3_RS16330 0.68 -0.8
119,976 - RALBFv3_RS16330 0.68 -1.2
119,976 - RALBFv3_RS16330 0.68 +0.2
119,978 + RALBFv3_RS16330 0.69 -0.5
119,978 + RALBFv3_RS16330 0.69 +0.5
119,978 + RALBFv3_RS16330 0.69 +2.0
119,978 + RALBFv3_RS16330 0.69 -0.2
119,978 + RALBFv3_RS16330 0.69 +0.3
119,979 - RALBFv3_RS16330 0.69 +0.2
119,979 - RALBFv3_RS16330 0.69 +0.4
119,979 - RALBFv3_RS16330 0.69 -0.1
119,979 - RALBFv3_RS16330 0.69 -0.9
119,979 - RALBFv3_RS16330 0.69 +1.0
119,979 - RALBFv3_RS16330 0.69 -3.0
119,979 - RALBFv3_RS16330 0.69 -0.7
119,979 - RALBFv3_RS16330 0.69 -0.4
119,979 - RALBFv3_RS16330 0.69 +0.0
119,979 - RALBFv3_RS16330 0.69 -0.1
119,979 - RALBFv3_RS16330 0.69 +0.9
119,979 - RALBFv3_RS16330 0.69 +0.4
120,035 + RALBFv3_RS16330 0.73 +0.7
120,036 - RALBFv3_RS16330 0.73 -0.8
120,036 - RALBFv3_RS16330 0.73 +0.4
120,036 - RALBFv3_RS16330 0.73 +0.9
120,166 - RALBFv3_RS16330 0.83 -1.1
120,166 - RALBFv3_RS16330 0.83 +0.3
120,168 - RALBFv3_RS16330 0.83 -0.6
120,168 - RALBFv3_RS16330 0.83 -0.5
120,272 + -0.5
120,285 - -0.4
120,285 - +0.4
120,411 - +0.5
120,432 + -1.7
120,445 + +0.7
120,445 + +0.8
120,446 - -1.3
120,446 - -0.6
120,462 - +0.2
120,487 - -0.4
120,555 - -0.1
120,621 - +0.6
120,622 + +0.3
120,670 + -0.4
120,670 + +0.4
120,671 - -0.1
120,778 + RALBFv3_RS16335 0.11 -1.8
120,861 + RALBFv3_RS16335 0.20 -0.1
120,862 + RALBFv3_RS16335 0.20 -0.3
120,862 + RALBFv3_RS16335 0.20 -0.5
120,863 - RALBFv3_RS16335 0.20 -0.3
120,863 - RALBFv3_RS16335 0.20 +1.4
120,863 - RALBFv3_RS16335 0.20 -0.6
120,875 - RALBFv3_RS16335 0.21 -0.5
121,001 + RALBFv3_RS16335 0.34 -0.1
121,001 + RALBFv3_RS16335 0.34 +0.3
121,001 + RALBFv3_RS16335 0.34 -0.9
121,001 + RALBFv3_RS16335 0.34 +0.3
121,001 + RALBFv3_RS16335 0.34 +1.4
121,001 + RALBFv3_RS16335 0.34 -0.1
121,001 + RALBFv3_RS16335 0.34 +0.5
121,002 - RALBFv3_RS16335 0.34 +0.4
121,002 - RALBFv3_RS16335 0.34 -0.4
121,002 - RALBFv3_RS16335 0.34 +0.3
121,002 - RALBFv3_RS16335 0.34 -1.4
121,025 - RALBFv3_RS16335 0.37 +0.7
121,102 - RALBFv3_RS16335 0.45 -0.1
121,112 + RALBFv3_RS16335 0.46 -1.0
121,114 + RALBFv3_RS16335 0.46 +0.0
121,114 + RALBFv3_RS16335 0.46 +1.7
121,114 + RALBFv3_RS16335 0.46 -0.4
121,114 + RALBFv3_RS16335 0.46 +1.0
121,114 + RALBFv3_RS16335 0.46 +0.3
121,115 - RALBFv3_RS16335 0.46 -1.8
121,115 - RALBFv3_RS16335 0.46 +1.7
121,116 + RALBFv3_RS16335 0.46 -0.8
121,116 - RALBFv3_RS16335 0.46 -0.1
121,167 + RALBFv3_RS16335 0.51 -0.7
121,167 + RALBFv3_RS16335 0.51 +0.6
121,168 - RALBFv3_RS16335 0.51 +1.1
121,168 - RALBFv3_RS16335 0.51 -0.0
121,243 + RALBFv3_RS16335 0.59 -0.2
121,243 + RALBFv3_RS16335 0.59 +1.0
121,366 + RALBFv3_RS16335 0.72 +0.5
121,367 - RALBFv3_RS16335 0.72 -1.4
121,367 - RALBFv3_RS16335 0.72 +1.8
121,480 + RALBFv3_RS16335 0.83 -0.3
121,481 - RALBFv3_RS16335 0.83 -0.1
121,481 - RALBFv3_RS16335 0.83 -1.8
121,696 + -0.1
121,696 + -1.0
121,696 + +0.2
121,697 - +0.3
121,697 - -0.5
121,697 - -1.3
121,701 + +0.7
121,701 + +0.6
121,701 + -0.4
121,701 + -0.1
121,702 - +0.4
121,702 - +1.4
121,702 - -0.4
121,866 - +0.2
121,872 + +0.6
121,872 + -0.0
121,872 + -1.7
121,873 - -0.2
121,963 - +0.9
122,126 + -0.5
122,126 + -1.0
122,126 + +1.2
122,126 + +0.3
122,126 + +0.0
122,127 - -0.6
122,127 - -0.1
122,127 - +0.2
122,127 - -0.6
122,142 + +1.9
122,222 - -0.8
122,222 - -0.6
122,222 - +1.1
122,560 + RALBFv3_RS16340 0.26 +0.3
122,560 + RALBFv3_RS16340 0.26 +0.4
122,560 + RALBFv3_RS16340 0.26 -0.9
122,561 - RALBFv3_RS16340 0.26 -1.1
122,561 - RALBFv3_RS16340 0.26 -0.5
122,561 - RALBFv3_RS16340 0.26 -0.4

Or see this region's nucleotide sequence