Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16150

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS16145 and RALBFv3_RS16150 are separated by 24 nucleotidesRALBFv3_RS16150 and RALBFv3_RS16155 are separated by 204 nucleotides RALBFv3_RS16145: RALBFv3_RS16145 - tartrate dehydrogenase, at 63,876 to 64,961 _RS16145 RALBFv3_RS16150: RALBFv3_RS16150 - NAD-dependent succinate-semialdehyde dehydrogenase, at 64,986 to 66,467 _RS16150 RALBFv3_RS16155: RALBFv3_RS16155 - type III effector, OspD family, at 66,672 to 69,191 _RS16155 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 63.996 kb on + strand, within RALBFv3_RS16145at 64.027 kb on - strand, within RALBFv3_RS16145at 64.030 kb on - strand, within RALBFv3_RS16145at 65.332 kb on - strand, within RALBFv3_RS16150at 65.343 kb on + strand, within RALBFv3_RS16150at 65.344 kb on - strand, within RALBFv3_RS16150at 65.344 kb on - strand, within RALBFv3_RS16150at 65.379 kb on + strand, within RALBFv3_RS16150at 65.380 kb on - strand, within RALBFv3_RS16150at 65.380 kb on - strand, within RALBFv3_RS16150at 65.380 kb on - strand, within RALBFv3_RS16150at 65.380 kb on - strand, within RALBFv3_RS16150at 65.526 kb on - strand, within RALBFv3_RS16150at 65.526 kb on - strand, within RALBFv3_RS16150at 65.526 kb on - strand, within RALBFv3_RS16150at 65.727 kb on + strand, within RALBFv3_RS16150at 65.727 kb on + strand, within RALBFv3_RS16150at 65.727 kb on + strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.729 kb on - strand, within RALBFv3_RS16150at 65.734 kb on + strand, within RALBFv3_RS16150at 65.895 kb on + strand, within RALBFv3_RS16150at 65.895 kb on + strand, within RALBFv3_RS16150at 65.896 kb on - strand, within RALBFv3_RS16150at 65.896 kb on - strand, within RALBFv3_RS16150at 65.896 kb on - strand, within RALBFv3_RS16150at 65.913 kb on + strand, within RALBFv3_RS16150at 65.913 kb on + strand, within RALBFv3_RS16150at 66.114 kb on + strand, within RALBFv3_RS16150at 66.114 kb on + strand, within RALBFv3_RS16150at 66.267 kb on + strand, within RALBFv3_RS16150at 66.278 kb on + strand, within RALBFv3_RS16150at 66.278 kb on + strand, within RALBFv3_RS16150at 66.278 kb on + strand, within RALBFv3_RS16150at 66.279 kb on - strand, within RALBFv3_RS16150at 66.279 kb on - strand, within RALBFv3_RS16150at 66.391 kb on - strandat 66.411 kb on + strandat 66.413 kb on - strandat 66.427 kb on - strandat 66.427 kb on - strandat 66.441 kb on + strandat 66.441 kb on + strandat 66.441 kb on + strandat 66.441 kb on + strandat 66.441 kb on + strandat 66.442 kb on - strandat 66.442 kb on - strandat 66.442 kb on - strandat 66.465 kb on + strandat 66.465 kb on + strandat 66.465 kb on + strandat 66.717 kb on + strandat 66.718 kb on - strandat 66.718 kb on - strandat 66.776 kb on - strandat 66.776 kb on - strandat 66.776 kb on - strandat 66.933 kb on + strand, within RALBFv3_RS16155at 67.122 kb on + strand, within RALBFv3_RS16155at 67.123 kb on - strand, within RALBFv3_RS16155at 67.166 kb on + strand, within RALBFv3_RS16155at 67.167 kb on - strand, within RALBFv3_RS16155at 67.234 kb on - strand, within RALBFv3_RS16155at 67.234 kb on - strand, within RALBFv3_RS16155at 67.309 kb on - strand, within RALBFv3_RS16155at 67.344 kb on + strand, within RALBFv3_RS16155at 67.344 kb on + strand, within RALBFv3_RS16155at 67.344 kb on + strand, within RALBFv3_RS16155at 67.344 kb on + strand, within RALBFv3_RS16155at 67.344 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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63,996 + RALBFv3_RS16145 0.11 +0.2
64,027 - RALBFv3_RS16145 0.14 -0.1
64,030 - RALBFv3_RS16145 0.14 +0.4
65,332 - RALBFv3_RS16150 0.23 -0.4
65,343 + RALBFv3_RS16150 0.24 -0.5
65,344 - RALBFv3_RS16150 0.24 -1.1
65,344 - RALBFv3_RS16150 0.24 -0.2
65,379 + RALBFv3_RS16150 0.27 +0.5
65,380 - RALBFv3_RS16150 0.27 +1.1
65,380 - RALBFv3_RS16150 0.27 +0.3
65,380 - RALBFv3_RS16150 0.27 +0.1
65,380 - RALBFv3_RS16150 0.27 -0.9
65,526 - RALBFv3_RS16150 0.36 +0.5
65,526 - RALBFv3_RS16150 0.36 -0.0
65,526 - RALBFv3_RS16150 0.36 +0.1
65,727 + RALBFv3_RS16150 0.50 -0.7
65,727 + RALBFv3_RS16150 0.50 +0.4
65,727 + RALBFv3_RS16150 0.50 +1.4
65,728 - RALBFv3_RS16150 0.50 +0.2
65,728 - RALBFv3_RS16150 0.50 -0.1
65,728 - RALBFv3_RS16150 0.50 +0.4
65,728 - RALBFv3_RS16150 0.50 -0.0
65,728 - RALBFv3_RS16150 0.50 +0.2
65,728 - RALBFv3_RS16150 0.50 -2.5
65,729 - RALBFv3_RS16150 0.50 -0.9
65,734 + RALBFv3_RS16150 0.50 -0.0
65,895 + RALBFv3_RS16150 0.61 -1.4
65,895 + RALBFv3_RS16150 0.61 +1.2
65,896 - RALBFv3_RS16150 0.61 +0.6
65,896 - RALBFv3_RS16150 0.61 +0.4
65,896 - RALBFv3_RS16150 0.61 -1.3
65,913 + RALBFv3_RS16150 0.63 -1.3
65,913 + RALBFv3_RS16150 0.63 -1.4
66,114 + RALBFv3_RS16150 0.76 +0.1
66,114 + RALBFv3_RS16150 0.76 +0.9
66,267 + RALBFv3_RS16150 0.86 -0.2
66,278 + RALBFv3_RS16150 0.87 -0.9
66,278 + RALBFv3_RS16150 0.87 +0.1
66,278 + RALBFv3_RS16150 0.87 +0.2
66,279 - RALBFv3_RS16150 0.87 +0.7
66,279 - RALBFv3_RS16150 0.87 -1.2
66,391 - +0.3
66,411 + +0.2
66,413 - +1.0
66,427 - +1.0
66,427 - -1.0
66,441 + +0.3
66,441 + +1.0
66,441 + -0.5
66,441 + -1.4
66,441 + -1.3
66,442 - +0.1
66,442 - +0.8
66,442 - +0.1
66,465 + -0.7
66,465 + +1.3
66,465 + -0.1
66,717 + -1.6
66,718 - +0.5
66,718 - +0.9
66,776 - +0.2
66,776 - -0.5
66,776 - -0.5
66,933 + RALBFv3_RS16155 0.10 -0.3
67,122 + RALBFv3_RS16155 0.18 +0.3
67,123 - RALBFv3_RS16155 0.18 -0.3
67,166 + RALBFv3_RS16155 0.20 -0.4
67,167 - RALBFv3_RS16155 0.20 -1.3
67,234 - RALBFv3_RS16155 0.22 +2.1
67,234 - RALBFv3_RS16155 0.22 +0.7
67,309 - RALBFv3_RS16155 0.25 -0.4
67,344 + RALBFv3_RS16155 0.27 -1.1
67,344 + RALBFv3_RS16155 0.27 +0.5
67,344 + RALBFv3_RS16155 0.27 -0.8
67,344 + RALBFv3_RS16155 0.27 -0.0
67,344 - RALBFv3_RS16155 0.27 -0.5
67,345 - RALBFv3_RS16155 0.27 -0.5
67,345 - RALBFv3_RS16155 0.27 -0.6
67,345 - RALBFv3_RS16155 0.27 -0.4
67,345 - RALBFv3_RS16155 0.27 -0.1
67,345 - RALBFv3_RS16155 0.27 +0.0
67,345 - RALBFv3_RS16155 0.27 +0.3

Or see this region's nucleotide sequence