Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS15730 and RALBFv3_RS15735 are separated by 83 nucleotides RALBFv3_RS15735 and RALBFv3_RS15740 are separated by 58 nucleotides RALBFv3_RS15740 and RALBFv3_RS15745 are separated by 122 nucleotides
RALBFv3_RS15730: RALBFv3_RS15730 - tRNA dihydrouridine(20/20a) synthase DusA, at 3,430,886 to 3,431,920
_RS15730
RALBFv3_RS15735: RALBFv3_RS15735 - tRNA-His, at 3,432,004 to 3,432,079
_RS15735
RALBFv3_RS15740: RALBFv3_RS15740 - hypothetical protein, at 3,432,138 to 3,432,530
_RS15740
RALBFv3_RS15745: RALBFv3_RS15745 - aminoacyl-histidine dipeptidase (carnosinase) (xaa-his dipeptidase) protein, at 3,432,653 to 3,434,386
_RS15745
Position (kb) 3432
3433 Strain fitness (log2 ratio) -1
0
1
2 at 3431.526 kb on + strand, within RALBFv3_RS15730 at 3431.636 kb on + strand, within RALBFv3_RS15730 at 3431.636 kb on + strand, within RALBFv3_RS15730 at 3432.247 kb on + strand, within RALBFv3_RS15740 at 3432.247 kb on + strand, within RALBFv3_RS15740 at 3432.356 kb on - strand, within RALBFv3_RS15740 at 3432.615 kb on - strand at 3432.657 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 3,431,526 + RALBFv3_RS15730 0.62 +0.5 3,431,636 + RALBFv3_RS15730 0.72 +2.5 3,431,636 + RALBFv3_RS15730 0.72 +0.4 3,432,247 + RALBFv3_RS15740 0.28 +1.2 3,432,247 + RALBFv3_RS15740 0.28 -0.2 3,432,356 - RALBFv3_RS15740 0.55 -0.4 3,432,615 - +0.1 3,432,657 + -0.7
Or see this region's nucleotide sequence