Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS07020

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS07010 and RALBFv3_RS07015 are separated by 25 nucleotidesRALBFv3_RS07015 and RALBFv3_RS07020 are separated by 102 nucleotidesRALBFv3_RS07020 and RALBFv3_RS07025 are separated by 7 nucleotides RALBFv3_RS07010: RALBFv3_RS07010 - RNA polymerase sigma factor, at 1,554,679 to 1,555,215 _RS07010 RALBFv3_RS07015: RALBFv3_RS07015 - ATP-binding protein, at 1,555,241 to 1,555,672 _RS07015 RALBFv3_RS07020: RALBFv3_RS07020 - c-type cytochrome biogenesis protein CcsB, at 1,555,775 to 1,556,962 _RS07020 RALBFv3_RS07025: RALBFv3_RS07025 - cytochrome c biogenesis protein ResB, at 1,556,970 to 1,559,153 _RS07025 Position (kb) 1555 1556 1557Strain fitness (log2 ratio) -2 -1 0 1at 1555.320 kb on + strand, within RALBFv3_RS07015at 1555.320 kb on + strand, within RALBFv3_RS07015at 1555.320 kb on + strand, within RALBFv3_RS07015at 1555.409 kb on - strand, within RALBFv3_RS07015at 1555.489 kb on - strand, within RALBFv3_RS07015at 1555.625 kb on + strand, within RALBFv3_RS07015at 1555.626 kb on - strand, within RALBFv3_RS07015at 1555.716 kb on + strandat 1555.717 kb on - strandat 1555.923 kb on + strand, within RALBFv3_RS07020at 1555.924 kb on - strand, within RALBFv3_RS07020at 1555.924 kb on - strand, within RALBFv3_RS07020at 1556.051 kb on - strand, within RALBFv3_RS07020at 1556.058 kb on + strand, within RALBFv3_RS07020at 1556.059 kb on - strand, within RALBFv3_RS07020at 1556.059 kb on - strand, within RALBFv3_RS07020at 1556.127 kb on + strand, within RALBFv3_RS07020at 1556.161 kb on + strand, within RALBFv3_RS07020at 1556.161 kb on + strand, within RALBFv3_RS07020at 1556.262 kb on + strand, within RALBFv3_RS07020at 1556.344 kb on - strand, within RALBFv3_RS07020at 1556.346 kb on + strand, within RALBFv3_RS07020at 1556.394 kb on + strand, within RALBFv3_RS07020at 1556.481 kb on - strand, within RALBFv3_RS07020at 1556.619 kb on + strand, within RALBFv3_RS07020at 1556.620 kb on - strand, within RALBFv3_RS07020at 1556.620 kb on - strand, within RALBFv3_RS07020at 1556.620 kb on - strand, within RALBFv3_RS07020at 1556.620 kb on - strand, within RALBFv3_RS07020at 1556.895 kb on + strandat 1556.895 kb on + strandat 1557.108 kb on + strandat 1557.178 kb on + strandat 1557.178 kb on + strandat 1557.179 kb on - strandat 1557.223 kb on + strand, within RALBFv3_RS07025at 1557.223 kb on + strand, within RALBFv3_RS07025at 1557.301 kb on + strand, within RALBFv3_RS07025at 1557.301 kb on + strand, within RALBFv3_RS07025at 1557.301 kb on + strand, within RALBFv3_RS07025at 1557.316 kb on + strand, within RALBFv3_RS07025at 1557.763 kb on + strand, within RALBFv3_RS07025at 1557.842 kb on - strand, within RALBFv3_RS07025at 1557.842 kb on - strand, within RALBFv3_RS07025at 1557.842 kb on - strand, within RALBFv3_RS07025at 1557.842 kb on - strand, within RALBFv3_RS07025at 1557.842 kb on - strand, within RALBFv3_RS07025at 1557.842 kb on - strand, within RALBFv3_RS07025at 1557.886 kb on + strand, within RALBFv3_RS07025

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,555,320 + RALBFv3_RS07015 0.18 +0.3
1,555,320 + RALBFv3_RS07015 0.18 -1.7
1,555,320 + RALBFv3_RS07015 0.18 +0.0
1,555,409 - RALBFv3_RS07015 0.39 +0.2
1,555,489 - RALBFv3_RS07015 0.57 -0.2
1,555,625 + RALBFv3_RS07015 0.89 +0.7
1,555,626 - RALBFv3_RS07015 0.89 -2.5
1,555,716 + -0.0
1,555,717 - -0.3
1,555,923 + RALBFv3_RS07020 0.12 +1.4
1,555,924 - RALBFv3_RS07020 0.13 +0.1
1,555,924 - RALBFv3_RS07020 0.13 -1.1
1,556,051 - RALBFv3_RS07020 0.23 -2.2
1,556,058 + RALBFv3_RS07020 0.24 -2.1
1,556,059 - RALBFv3_RS07020 0.24 +0.2
1,556,059 - RALBFv3_RS07020 0.24 -2.5
1,556,127 + RALBFv3_RS07020 0.30 -1.0
1,556,161 + RALBFv3_RS07020 0.32 -1.3
1,556,161 + RALBFv3_RS07020 0.32 +1.4
1,556,262 + RALBFv3_RS07020 0.41 +0.0
1,556,344 - RALBFv3_RS07020 0.48 -0.8
1,556,346 + RALBFv3_RS07020 0.48 +0.6
1,556,394 + RALBFv3_RS07020 0.52 -1.0
1,556,481 - RALBFv3_RS07020 0.59 +0.4
1,556,619 + RALBFv3_RS07020 0.71 +0.5
1,556,620 - RALBFv3_RS07020 0.71 -0.9
1,556,620 - RALBFv3_RS07020 0.71 -0.4
1,556,620 - RALBFv3_RS07020 0.71 -0.7
1,556,620 - RALBFv3_RS07020 0.71 +0.1
1,556,895 + -2.5
1,556,895 + -0.6
1,557,108 + -2.3
1,557,178 + -1.7
1,557,178 + -0.3
1,557,179 - -1.1
1,557,223 + RALBFv3_RS07025 0.12 -0.3
1,557,223 + RALBFv3_RS07025 0.12 -1.1
1,557,301 + RALBFv3_RS07025 0.15 +0.2
1,557,301 + RALBFv3_RS07025 0.15 -1.5
1,557,301 + RALBFv3_RS07025 0.15 -0.6
1,557,316 + RALBFv3_RS07025 0.16 -0.9
1,557,763 + RALBFv3_RS07025 0.36 +0.3
1,557,842 - RALBFv3_RS07025 0.40 -1.7
1,557,842 - RALBFv3_RS07025 0.40 -0.9
1,557,842 - RALBFv3_RS07025 0.40 -0.6
1,557,842 - RALBFv3_RS07025 0.40 -1.2
1,557,842 - RALBFv3_RS07025 0.40 -0.6
1,557,842 - RALBFv3_RS07025 0.40 -1.2
1,557,886 + RALBFv3_RS07025 0.42 -0.7

Or see this region's nucleotide sequence