Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06945

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06935 and RALBFv3_RS06940 overlap by 4 nucleotidesRALBFv3_RS06940 and RALBFv3_RS06945 are separated by 173 nucleotidesRALBFv3_RS06945 and RALBFv3_RS06950 overlap by 4 nucleotidesRALBFv3_RS06950 and RALBFv3_RS06955 overlap by 4 nucleotides RALBFv3_RS06935: RALBFv3_RS06935 - 3-dehydroquinate synthase, at 1,539,335 to 1,540,441 _RS06935 RALBFv3_RS06940: RALBFv3_RS06940 - shikimate kinase, at 1,540,438 to 1,540,977 _RS06940 RALBFv3_RS06945: RALBFv3_RS06945 - type IV pilus secretin PilQ, at 1,541,151 to 1,543,292 _RS06945 RALBFv3_RS06950: RALBFv3_RS06950 - pilus assembly protein PilP, at 1,543,289 to 1,543,834 _RS06950 RALBFv3_RS06955: RALBFv3_RS06955 - pilus assembly protein PilO, at 1,543,831 to 1,544,490 _RS06955 Position (kb) 1541 1542 1543 1544Strain fitness (log2 ratio) -2 -1 0 1 2at 1540.525 kb on - strand, within RALBFv3_RS06940at 1540.525 kb on - strand, within RALBFv3_RS06940at 1540.528 kb on - strand, within RALBFv3_RS06940at 1541.044 kb on + strandat 1541.152 kb on + strandat 1541.311 kb on + strandat 1541.528 kb on + strand, within RALBFv3_RS06945at 1541.528 kb on + strand, within RALBFv3_RS06945at 1541.865 kb on - strand, within RALBFv3_RS06945at 1542.515 kb on - strand, within RALBFv3_RS06945at 1542.515 kb on - strand, within RALBFv3_RS06945at 1542.614 kb on - strand, within RALBFv3_RS06945at 1542.893 kb on - strand, within RALBFv3_RS06945at 1542.985 kb on + strand, within RALBFv3_RS06945at 1542.985 kb on + strand, within RALBFv3_RS06945at 1542.985 kb on + strand, within RALBFv3_RS06945at 1542.986 kb on - strand, within RALBFv3_RS06945at 1543.407 kb on + strand, within RALBFv3_RS06950at 1543.422 kb on + strand, within RALBFv3_RS06950at 1543.422 kb on + strand, within RALBFv3_RS06950at 1543.422 kb on + strand, within RALBFv3_RS06950at 1543.905 kb on - strand, within RALBFv3_RS06955at 1543.974 kb on + strand, within RALBFv3_RS06955at 1544.273 kb on + strand, within RALBFv3_RS06955at 1544.274 kb on - strand, within RALBFv3_RS06955

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,540,525 - RALBFv3_RS06940 0.16 -1.8
1,540,525 - RALBFv3_RS06940 0.16 -2.1
1,540,528 - RALBFv3_RS06940 0.17 -0.5
1,541,044 + +0.2
1,541,152 + -0.5
1,541,311 + -0.9
1,541,528 + RALBFv3_RS06945 0.18 -0.4
1,541,528 + RALBFv3_RS06945 0.18 +1.0
1,541,865 - RALBFv3_RS06945 0.33 +1.2
1,542,515 - RALBFv3_RS06945 0.64 +0.0
1,542,515 - RALBFv3_RS06945 0.64 -0.5
1,542,614 - RALBFv3_RS06945 0.68 -1.0
1,542,893 - RALBFv3_RS06945 0.81 -0.2
1,542,985 + RALBFv3_RS06945 0.86 -2.7
1,542,985 + RALBFv3_RS06945 0.86 +0.3
1,542,985 + RALBFv3_RS06945 0.86 -0.4
1,542,986 - RALBFv3_RS06945 0.86 -0.1
1,543,407 + RALBFv3_RS06950 0.22 -1.4
1,543,422 + RALBFv3_RS06950 0.24 -0.7
1,543,422 + RALBFv3_RS06950 0.24 +0.7
1,543,422 + RALBFv3_RS06950 0.24 -0.3
1,543,905 - RALBFv3_RS06955 0.11 -0.7
1,543,974 + RALBFv3_RS06955 0.22 -0.9
1,544,273 + RALBFv3_RS06955 0.67 +2.6
1,544,274 - RALBFv3_RS06955 0.67 -0.5

Or see this region's nucleotide sequence