Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04350 and RALBFv3_RS04355 are separated by 21 nucleotides RALBFv3_RS04355 and RALBFv3_RS04360 are separated by 2 nucleotides RALBFv3_RS04360 and RALBFv3_RS04365 are separated by 15 nucleotides
RALBFv3_RS04350: RALBFv3_RS04350 - formate dehydrogenase subunit gamma, at 976,346 to 977,509
_RS04350
RALBFv3_RS04355: RALBFv3_RS04355 - hypothetical protein, at 977,531 to 977,779
_RS04355
RALBFv3_RS04360: RALBFv3_RS04360 - formate dehydrogenase, at 977,782 to 978,468
_RS04360
RALBFv3_RS04365: RALBFv3_RS04365 - formate dehydrogenase, at 978,484 to 981,480
_RS04365
Position (kb) 977
978 Strain fitness (log2 ratio) -1
0
1 at 976.536 kb on + strand, within RALBFv3_RS04350 at 976.536 kb on + strand, within RALBFv3_RS04350 at 976.536 kb on + strand, within RALBFv3_RS04350 at 976.536 kb on + strand, within RALBFv3_RS04350 at 976.536 kb on + strand, within RALBFv3_RS04350 at 976.536 kb on + strand, within RALBFv3_RS04350 at 976.536 kb on + strand, within RALBFv3_RS04350 at 976.537 kb on - strand, within RALBFv3_RS04350 at 976.537 kb on - strand, within RALBFv3_RS04350 at 976.537 kb on - strand, within RALBFv3_RS04350 at 976.537 kb on - strand, within RALBFv3_RS04350 at 976.537 kb on - strand, within RALBFv3_RS04350 at 976.620 kb on + strand, within RALBFv3_RS04350 at 976.621 kb on - strand, within RALBFv3_RS04350 at 976.896 kb on + strand, within RALBFv3_RS04350 at 976.896 kb on + strand, within RALBFv3_RS04350 at 976.897 kb on - strand, within RALBFv3_RS04350 at 977.016 kb on + strand, within RALBFv3_RS04350 at 977.017 kb on - strand, within RALBFv3_RS04350 at 977.017 kb on - strand, within RALBFv3_RS04350 at 977.232 kb on + strand, within RALBFv3_RS04350 at 977.652 kb on + strand, within RALBFv3_RS04355 at 977.653 kb on - strand, within RALBFv3_RS04355 at 977.783 kb on + strand at 977.783 kb on + strand at 977.784 kb on - strand at 977.786 kb on + strand at 977.786 kb on + strand at 977.787 kb on - strand at 977.787 kb on - strand at 978.052 kb on + strand, within RALBFv3_RS04360 at 978.054 kb on - strand, within RALBFv3_RS04360 at 978.182 kb on + strand, within RALBFv3_RS04360 at 978.191 kb on + strand, within RALBFv3_RS04360 at 978.249 kb on - strand, within RALBFv3_RS04360 at 978.485 kb on + strand at 978.555 kb on - strand at 978.614 kb on + strand at 978.614 kb on + strand at 978.614 kb on + strand at 978.615 kb on - strand at 978.615 kb on - strand at 978.615 kb on - strand at 978.746 kb on + strand at 978.747 kb on - strand at 978.747 kb on - strand at 978.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 976,536 + RALBFv3_RS04350 0.16 +0.7 976,536 + RALBFv3_RS04350 0.16 -0.3 976,536 + RALBFv3_RS04350 0.16 -0.0 976,536 + RALBFv3_RS04350 0.16 +1.3 976,536 + RALBFv3_RS04350 0.16 +1.0 976,536 + RALBFv3_RS04350 0.16 +0.2 976,536 + RALBFv3_RS04350 0.16 +0.1 976,537 - RALBFv3_RS04350 0.16 -0.6 976,537 - RALBFv3_RS04350 0.16 +1.1 976,537 - RALBFv3_RS04350 0.16 +1.7 976,537 - RALBFv3_RS04350 0.16 +1.0 976,537 - RALBFv3_RS04350 0.16 -0.3 976,620 + RALBFv3_RS04350 0.24 -0.1 976,621 - RALBFv3_RS04350 0.24 +0.4 976,896 + RALBFv3_RS04350 0.47 -1.3 976,896 + RALBFv3_RS04350 0.47 -1.0 976,897 - RALBFv3_RS04350 0.47 -0.3 977,016 + RALBFv3_RS04350 0.58 -0.3 977,017 - RALBFv3_RS04350 0.58 -0.5 977,017 - RALBFv3_RS04350 0.58 +0.3 977,232 + RALBFv3_RS04350 0.76 -0.1 977,652 + RALBFv3_RS04355 0.49 +1.1 977,653 - RALBFv3_RS04355 0.49 -0.4 977,783 + -0.5 977,783 + +0.2 977,784 - +0.3 977,786 + -0.7 977,786 + -0.8 977,787 - -1.1 977,787 - -0.3 978,052 + RALBFv3_RS04360 0.39 -1.6 978,054 - RALBFv3_RS04360 0.40 -0.8 978,182 + RALBFv3_RS04360 0.58 -0.1 978,191 + RALBFv3_RS04360 0.60 +1.0 978,249 - RALBFv3_RS04360 0.68 -1.1 978,485 + +0.7 978,555 - -0.1 978,614 + -0.8 978,614 + +0.6 978,614 + -1.0 978,615 - +0.2 978,615 - -0.1 978,615 - -0.0 978,746 + +0.6 978,747 - +0.4 978,747 - +1.3 978,747 - +0.2
Or see this region's nucleotide sequence