Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02025 and RALBFv3_RS02030 are separated by 109 nucleotides RALBFv3_RS02030 and RALBFv3_RS02035 are separated by 312 nucleotides RALBFv3_RS02035 and RALBFv3_RS02040 are separated by 39 nucleotides RALBFv3_RS02040 and RALBFv3_RS02045 are separated by 184 nucleotides
RALBFv3_RS02025: RALBFv3_RS02025 - hypothetical protein, at 455,345 to 455,875
_RS02025
RALBFv3_RS02030: RALBFv3_RS02030 - universal stress protein, at 455,985 to 456,485
_RS02030
RALBFv3_RS02035: RALBFv3_RS02035 - CBS domain-containing protein, at 456,798 to 457,268
_RS02035
RALBFv3_RS02040: RALBFv3_RS02040 - DUF2892 domain-containing protein, at 457,308 to 457,502
_RS02040
RALBFv3_RS02045: RALBFv3_RS02045 - universal stress protein, at 457,687 to 458,142
_RS02045
Position (kb) 456
457
458 Strain fitness (log2 ratio) -1
0
1 at 455.851 kb on - strand at 455.853 kb on + strand at 455.853 kb on + strand at 455.854 kb on - strand at 456.317 kb on + strand, within RALBFv3_RS02030 at 456.348 kb on + strand, within RALBFv3_RS02030 at 456.672 kb on + strand at 456.732 kb on + strand at 456.733 kb on - strand at 456.778 kb on + strand at 456.778 kb on + strand at 456.778 kb on + strand at 456.779 kb on - strand at 456.779 kb on - strand at 456.779 kb on - strand at 457.461 kb on + strand, within RALBFv3_RS02040 at 457.462 kb on - strand, within RALBFv3_RS02040 at 457.628 kb on + strand at 457.629 kb on - strand at 457.691 kb on - strand at 457.691 kb on - strand at 457.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 455,851 - +0.8 455,853 + +0.1 455,853 + -1.0 455,854 - -0.5 456,317 + RALBFv3_RS02030 0.66 +0.8 456,348 + RALBFv3_RS02030 0.72 +0.1 456,672 + -0.8 456,732 + -0.3 456,733 - -1.2 456,778 + -0.5 456,778 + +0.7 456,778 + +0.0 456,779 - -1.1 456,779 - +1.6 456,779 - -0.6 457,461 + RALBFv3_RS02040 0.78 +0.9 457,462 - RALBFv3_RS02040 0.79 -0.1 457,628 + -0.2 457,629 - -0.4 457,691 - -0.6 457,691 - -1.0 457,691 - +0.4
Or see this region's nucleotide sequence