Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01845

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01840 and RALBFv3_RS01845 are separated by 211 nucleotidesRALBFv3_RS01845 and RALBFv3_RS01850 are separated by 66 nucleotides RALBFv3_RS01840: RALBFv3_RS01840 - NAD(P)-dependent oxidoreductase, at 409,552 to 410,337 _RS01840 RALBFv3_RS01845: RALBFv3_RS01845 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 410,549 to 412,237 _RS01845 RALBFv3_RS01850: RALBFv3_RS01850 - chorismate synthase, at 412,304 to 413,404 _RS01850 Position (kb) 410 411 412 413Strain fitness (log2 ratio) -2 -1 0 1at 409.765 kb on - strand, within RALBFv3_RS01840at 409.765 kb on - strand, within RALBFv3_RS01840at 410.344 kb on + strandat 410.360 kb on + strandat 410.361 kb on - strandat 410.419 kb on + strandat 412.224 kb on - strandat 412.305 kb on + strandat 412.938 kb on + strand, within RALBFv3_RS01850at 413.062 kb on - strand, within RALBFv3_RS01850

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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409,765 - RALBFv3_RS01840 0.27 +1.5
409,765 - RALBFv3_RS01840 0.27 -0.3
410,344 + +0.8
410,360 + +1.1
410,361 - -0.5
410,419 + -0.8
412,224 - -0.1
412,305 + +0.1
412,938 + RALBFv3_RS01850 0.58 -1.1
413,062 - RALBFv3_RS01850 0.69 -2.0

Or see this region's nucleotide sequence