Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08840

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08835 and MMP_RS08840 are separated by 53 nucleotidesMMP_RS08840 and MMP_RS08845 are separated by 55 nucleotidesMMP_RS08845 and MMP_RS08850 are separated by 170 nucleotides MMP_RS08835: MMP_RS08835 - H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein, at 1,652,183 to 1,653,208 _RS08835 MMP_RS08840: MMP_RS08840 - class I SAM-dependent methyltransferase, at 1,653,262 to 1,654,293 _RS08840 MMP_RS08845: MMP_RS08845 - archaellum operon transcriptional activator EarA family protein, at 1,654,349 to 1,654,666 _RS08845 MMP_RS08850: MMP_RS08850 - hypothetical protein, at 1,654,837 to 1,657,491 _RS08850 Position (kb) 1653 1654 1655Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 1652.486 kb on - strand, within MMP_RS08835at 1652.564 kb on - strand, within MMP_RS08835at 1652.739 kb on - strand, within MMP_RS08835at 1652.740 kb on + strand, within MMP_RS08835at 1652.838 kb on - strand, within MMP_RS08835at 1652.839 kb on + strand, within MMP_RS08835at 1652.845 kb on - strand, within MMP_RS08835at 1652.906 kb on + strand, within MMP_RS08835at 1653.001 kb on - strand, within MMP_RS08835at 1653.041 kb on - strand, within MMP_RS08835at 1653.071 kb on + strand, within MMP_RS08835at 1653.192 kb on - strandat 1653.246 kb on - strandat 1653.260 kb on - strandat 1653.288 kb on - strandat 1653.298 kb on - strandat 1653.299 kb on + strandat 1653.305 kb on - strandat 1653.305 kb on - strandat 1653.306 kb on + strandat 1653.374 kb on - strand, within MMP_RS08840at 1653.375 kb on + strand, within MMP_RS08840at 1653.375 kb on + strand, within MMP_RS08840at 1653.375 kb on + strand, within MMP_RS08840at 1653.382 kb on - strand, within MMP_RS08840at 1653.415 kb on + strand, within MMP_RS08840at 1653.417 kb on - strand, within MMP_RS08840at 1653.418 kb on + strand, within MMP_RS08840at 1653.421 kb on - strand, within MMP_RS08840at 1653.421 kb on - strand, within MMP_RS08840at 1653.422 kb on + strand, within MMP_RS08840at 1653.422 kb on + strand, within MMP_RS08840at 1653.519 kb on + strand, within MMP_RS08840at 1653.665 kb on + strand, within MMP_RS08840at 1653.804 kb on + strand, within MMP_RS08840at 1654.093 kb on - strand, within MMP_RS08840at 1654.147 kb on + strand, within MMP_RS08840at 1654.165 kb on - strand, within MMP_RS08840at 1654.196 kb on + strandat 1654.222 kb on + strandat 1654.265 kb on - strandat 1654.294 kb on + strandat 1654.336 kb on + strandat 1654.567 kb on + strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.583 kb on - strand, within MMP_RS08845at 1654.584 kb on + strand, within MMP_RS08845at 1654.590 kb on - strand, within MMP_RS08845at 1654.590 kb on - strand, within MMP_RS08845at 1654.591 kb on + strand, within MMP_RS08845at 1654.591 kb on + strand, within MMP_RS08845at 1654.591 kb on + strand, within MMP_RS08845at 1654.593 kb on + strand, within MMP_RS08845at 1654.639 kb on - strandat 1654.658 kb on + strandat 1654.662 kb on + strandat 1654.662 kb on + strandat 1654.717 kb on - strandat 1654.737 kb on + strandat 1654.757 kb on + strandat 1654.757 kb on + strandat 1654.994 kb on + strandat 1655.084 kb on - strandat 1655.084 kb on - strandat 1655.132 kb on + strand, within MMP_RS08850at 1655.173 kb on + strand, within MMP_RS08850at 1655.230 kb on + strand, within MMP_RS08850at 1655.230 kb on + strand, within MMP_RS08850at 1655.268 kb on + strand, within MMP_RS08850at 1655.287 kb on - strand, within MMP_RS08850at 1655.287 kb on - strand, within MMP_RS08850

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,652,486 - MMP_RS08835 0.30 -0.1
1,652,564 - MMP_RS08835 0.37 -0.8
1,652,739 - MMP_RS08835 0.54 -0.6
1,652,740 + MMP_RS08835 0.54 +0.3
1,652,838 - MMP_RS08835 0.64 +1.1
1,652,839 + MMP_RS08835 0.64 +1.2
1,652,845 - MMP_RS08835 0.65 +0.7
1,652,906 + MMP_RS08835 0.70 +0.7
1,653,001 - MMP_RS08835 0.80 +2.7
1,653,041 - MMP_RS08835 0.84 +0.5
1,653,071 + MMP_RS08835 0.87 +1.6
1,653,192 - +3.1
1,653,246 - +0.0
1,653,260 - +1.9
1,653,288 - -1.9
1,653,298 - -3.2
1,653,299 + -5.7
1,653,305 - -2.9
1,653,305 - -4.8
1,653,306 + -3.2
1,653,374 - MMP_RS08840 0.11 -5.6
1,653,375 + MMP_RS08840 0.11 -5.5
1,653,375 + MMP_RS08840 0.11 -5.7
1,653,375 + MMP_RS08840 0.11 -4.2
1,653,382 - MMP_RS08840 0.12 -4.7
1,653,415 + MMP_RS08840 0.15 -3.5
1,653,417 - MMP_RS08840 0.15 -5.5
1,653,418 + MMP_RS08840 0.15 -6.0
1,653,421 - MMP_RS08840 0.15 -5.4
1,653,421 - MMP_RS08840 0.15 -5.3
1,653,422 + MMP_RS08840 0.16 -5.2
1,653,422 + MMP_RS08840 0.16 -6.1
1,653,519 + MMP_RS08840 0.25 -6.2
1,653,665 + MMP_RS08840 0.39 -5.6
1,653,804 + MMP_RS08840 0.53 -6.1
1,654,093 - MMP_RS08840 0.81 -5.9
1,654,147 + MMP_RS08840 0.86 -4.6
1,654,165 - MMP_RS08840 0.88 -6.3
1,654,196 + -3.5
1,654,222 + -5.3
1,654,265 - -6.2
1,654,294 + -3.3
1,654,336 + -5.2
1,654,567 + MMP_RS08845 0.69 +3.2
1,654,583 - MMP_RS08845 0.74 +3.7
1,654,583 - MMP_RS08845 0.74 +4.2
1,654,583 - MMP_RS08845 0.74 +2.8
1,654,583 - MMP_RS08845 0.74 +2.3
1,654,583 - MMP_RS08845 0.74 +3.2
1,654,584 + MMP_RS08845 0.74 +2.3
1,654,590 - MMP_RS08845 0.76 +3.0
1,654,590 - MMP_RS08845 0.76 +2.7
1,654,591 + MMP_RS08845 0.76 +2.1
1,654,591 + MMP_RS08845 0.76 +4.2
1,654,591 + MMP_RS08845 0.76 +4.3
1,654,593 + MMP_RS08845 0.77 +2.6
1,654,639 - +4.3
1,654,658 + +3.3
1,654,662 + +2.0
1,654,662 + +3.1
1,654,717 - +1.7
1,654,737 + +2.3
1,654,757 + +3.1
1,654,757 + +1.2
1,654,994 + +2.6
1,655,084 - +3.3
1,655,084 - +2.0
1,655,132 + MMP_RS08850 0.11 +2.3
1,655,173 + MMP_RS08850 0.13 +3.1
1,655,230 + MMP_RS08850 0.15 +2.7
1,655,230 + MMP_RS08850 0.15 +1.9
1,655,268 + MMP_RS08850 0.16 +1.9
1,655,287 - MMP_RS08850 0.17 +3.0
1,655,287 - MMP_RS08850 0.17 +2.8

Or see this region's nucleotide sequence