Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08740 and MMP_RS08745 are separated by 697 nucleotides MMP_RS08745 and MMP_RS08750 are separated by 329 nucleotides MMP_RS08750 and MMP_RS08755 are separated by 0 nucleotides
MMP_RS08740: MMP_RS08740 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 1,636,988 to 1,638,964
_RS08740
MMP_RS08745: MMP_RS08745 - CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase, at 1,639,662 to 1,640,198
_RS08745
MMP_RS08750: MMP_RS08750 - hypothetical protein, at 1,640,528 to 1,640,719
_RS08750
MMP_RS08755: MMP_RS08755 - sodium:solute symporter family protein, at 1,640,720 to 1,642,321
_RS08755
Position (kb)
1639
1640
1641 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 1639.009 kb on - strand at 1639.010 kb on + strand at 1639.011 kb on - strand at 1639.011 kb on - strand at 1639.039 kb on + strand at 1639.206 kb on + strand at 1639.217 kb on + strand at 1639.245 kb on + strand at 1639.275 kb on - strand at 1639.276 kb on + strand at 1639.277 kb on - strand at 1639.278 kb on + strand at 1639.278 kb on + strand at 1639.279 kb on - strand at 1639.280 kb on + strand at 1639.280 kb on + strand at 1639.298 kb on - strand at 1639.339 kb on - strand at 1639.373 kb on + strand at 1639.421 kb on + strand at 1639.439 kb on + strand at 1639.439 kb on + strand at 1639.451 kb on - strand at 1639.452 kb on + strand at 1639.516 kb on - strand at 1639.521 kb on - strand at 1639.522 kb on + strand at 1639.522 kb on + strand at 1639.525 kb on - strand at 1639.526 kb on + strand at 1639.593 kb on + strand at 1639.605 kb on - strand at 1639.605 kb on - strand at 1639.625 kb on - strand at 1639.625 kb on - strand at 1639.626 kb on + strand at 1639.626 kb on + strand at 1639.630 kb on - strand at 1639.631 kb on + strand at 1639.631 kb on + strand at 1639.681 kb on - strand at 1639.699 kb on + strand at 1639.713 kb on - strand at 1639.714 kb on + strand at 1639.717 kb on - strand, within MMP_RS08745 at 1639.736 kb on - strand, within MMP_RS08745 at 1639.810 kb on - strand, within MMP_RS08745 at 1639.874 kb on - strand, within MMP_RS08745 at 1639.880 kb on - strand, within MMP_RS08745 at 1639.881 kb on + strand, within MMP_RS08745 at 1639.882 kb on - strand, within MMP_RS08745 at 1639.883 kb on + strand, within MMP_RS08745 at 1639.883 kb on + strand, within MMP_RS08745 at 1639.883 kb on + strand, within MMP_RS08745 at 1639.885 kb on - strand, within MMP_RS08745 at 1639.886 kb on + strand, within MMP_RS08745 at 1639.886 kb on + strand, within MMP_RS08745 at 1639.887 kb on - strand, within MMP_RS08745 at 1639.889 kb on - strand, within MMP_RS08745 at 1639.889 kb on - strand, within MMP_RS08745 at 1639.931 kb on - strand, within MMP_RS08745 at 1640.109 kb on + strand, within MMP_RS08745 at 1640.109 kb on + strand, within MMP_RS08745 at 1640.120 kb on + strand, within MMP_RS08745 at 1640.196 kb on - strand at 1640.244 kb on + strand at 1640.244 kb on + strand at 1640.245 kb on - strand at 1640.245 kb on - strand at 1640.249 kb on - strand at 1640.250 kb on + strand at 1640.250 kb on + strand at 1640.250 kb on + strand at 1640.250 kb on + strand at 1640.252 kb on - strand at 1640.262 kb on - strand at 1640.412 kb on + strand at 1640.450 kb on - strand at 1640.450 kb on - strand at 1640.451 kb on + strand at 1640.451 kb on + strand at 1640.451 kb on + strand at 1640.455 kb on - strand at 1640.466 kb on - strand at 1640.479 kb on + strand at 1640.479 kb on + strand at 1640.601 kb on - strand, within MMP_RS08750 at 1640.601 kb on - strand, within MMP_RS08750 at 1640.602 kb on + strand, within MMP_RS08750 at 1640.736 kb on - strand at 1640.752 kb on + strand at 1640.755 kb on + strand at 1640.756 kb on - strand at 1640.756 kb on - strand at 1640.757 kb on + strand at 1640.763 kb on - strand at 1640.925 kb on - strand, within MMP_RS08755 at 1640.975 kb on + strand, within MMP_RS08755 at 1640.981 kb on + strand, within MMP_RS08755 at 1640.982 kb on - strand, within MMP_RS08755 at 1641.010 kb on - strand, within MMP_RS08755 at 1641.082 kb on - strand, within MMP_RS08755 at 1641.084 kb on - strand, within MMP_RS08755 at 1641.106 kb on + strand, within MMP_RS08755 at 1641.166 kb on + strand, within MMP_RS08755
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 1,639,009 - -3.2 1,639,010 + -3.5 1,639,011 - -3.6 1,639,011 - -3.7 1,639,039 + -6.2 1,639,206 + -1.2 1,639,217 + +1.3 1,639,245 + -0.3 1,639,275 - -0.5 1,639,276 + -0.9 1,639,277 - +0.6 1,639,278 + -0.2 1,639,278 + -1.2 1,639,279 - -0.8 1,639,280 + -2.9 1,639,280 + +0.3 1,639,298 - -1.6 1,639,339 - -1.0 1,639,373 + +0.6 1,639,421 + +0.2 1,639,439 + +1.9 1,639,439 + +0.1 1,639,451 - -0.4 1,639,452 + +0.5 1,639,516 - +0.6 1,639,521 - -0.8 1,639,522 + -0.1 1,639,522 + +0.0 1,639,525 - +1.3 1,639,526 + +0.6 1,639,593 + +1.0 1,639,605 - -6.1 1,639,605 - -4.4 1,639,625 - -4.3 1,639,625 - -3.5 1,639,626 + -4.2 1,639,626 + -2.7 1,639,630 - -6.3 1,639,631 + -4.2 1,639,631 + -3.8 1,639,681 - -4.6 1,639,699 + -3.8 1,639,713 - -2.1 1,639,714 + -4.2 1,639,717 - MMP_RS08745 0.10 -4.1 1,639,736 - MMP_RS08745 0.14 -2.9 1,639,810 - MMP_RS08745 0.28 -3.1 1,639,874 - MMP_RS08745 0.39 -3.5 1,639,880 - MMP_RS08745 0.41 -3.6 1,639,881 + MMP_RS08745 0.41 -3.1 1,639,882 - MMP_RS08745 0.41 -3.5 1,639,883 + MMP_RS08745 0.41 -5.4 1,639,883 + MMP_RS08745 0.41 -2.8 1,639,883 + MMP_RS08745 0.41 -4.7 1,639,885 - MMP_RS08745 0.42 -1.6 1,639,886 + MMP_RS08745 0.42 -2.7 1,639,886 + MMP_RS08745 0.42 -4.0 1,639,887 - MMP_RS08745 0.42 -2.7 1,639,889 - MMP_RS08745 0.42 -2.2 1,639,889 - MMP_RS08745 0.42 -3.2 1,639,931 - MMP_RS08745 0.50 -3.6 1,640,109 + MMP_RS08745 0.83 -5.2 1,640,109 + MMP_RS08745 0.83 -2.6 1,640,120 + MMP_RS08745 0.85 -4.5 1,640,196 - +0.5 1,640,244 + +1.2 1,640,244 + -0.4 1,640,245 - +0.6 1,640,245 - +0.5 1,640,249 - +0.8 1,640,250 + +0.4 1,640,250 + +1.4 1,640,250 + +0.8 1,640,250 + +0.0 1,640,252 - -1.0 1,640,262 - +0.0 1,640,412 + +1.4 1,640,450 - +0.1 1,640,450 - +0.3 1,640,451 + -0.5 1,640,451 + -0.4 1,640,451 + +1.0 1,640,455 - +0.0 1,640,466 - +0.9 1,640,479 + +0.6 1,640,479 + +0.7 1,640,601 - MMP_RS08750 0.38 -4.8 1,640,601 - MMP_RS08750 0.38 +0.1 1,640,602 + MMP_RS08750 0.39 +0.4 1,640,736 - -1.5 1,640,752 + -0.7 1,640,755 + -0.6 1,640,756 - +0.7 1,640,756 - +0.0 1,640,757 + +1.5 1,640,763 - -0.1 1,640,925 - MMP_RS08755 0.13 -0.7 1,640,975 + MMP_RS08755 0.16 +0.7 1,640,981 + MMP_RS08755 0.16 +0.6 1,640,982 - MMP_RS08755 0.16 -0.7 1,641,010 - MMP_RS08755 0.18 +1.2 1,641,082 - MMP_RS08755 0.23 +0.2 1,641,084 - MMP_RS08755 0.23 -0.3 1,641,106 + MMP_RS08755 0.24 +0.1 1,641,166 + MMP_RS08755 0.28 +0.9
Or see this region's nucleotide sequence