Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08745

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08740 and MMP_RS08745 are separated by 697 nucleotidesMMP_RS08745 and MMP_RS08750 are separated by 329 nucleotidesMMP_RS08750 and MMP_RS08755 are separated by 0 nucleotides MMP_RS08740: MMP_RS08740 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 1,636,988 to 1,638,964 _RS08740 MMP_RS08745: MMP_RS08745 - CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase, at 1,639,662 to 1,640,198 _RS08745 MMP_RS08750: MMP_RS08750 - hypothetical protein, at 1,640,528 to 1,640,719 _RS08750 MMP_RS08755: MMP_RS08755 - sodium:solute symporter family protein, at 1,640,720 to 1,642,321 _RS08755 Position (kb) 1639 1640 1641Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1639.009 kb on - strandat 1639.010 kb on + strandat 1639.011 kb on - strandat 1639.011 kb on - strandat 1639.039 kb on + strandat 1639.206 kb on + strandat 1639.217 kb on + strandat 1639.245 kb on + strandat 1639.275 kb on - strandat 1639.276 kb on + strandat 1639.277 kb on - strandat 1639.278 kb on + strandat 1639.278 kb on + strandat 1639.279 kb on - strandat 1639.280 kb on + strandat 1639.280 kb on + strandat 1639.298 kb on - strandat 1639.339 kb on - strandat 1639.373 kb on + strandat 1639.421 kb on + strandat 1639.439 kb on + strandat 1639.439 kb on + strandat 1639.451 kb on - strandat 1639.452 kb on + strandat 1639.516 kb on - strandat 1639.521 kb on - strandat 1639.522 kb on + strandat 1639.522 kb on + strandat 1639.525 kb on - strandat 1639.526 kb on + strandat 1639.593 kb on + strandat 1639.605 kb on - strandat 1639.605 kb on - strandat 1639.625 kb on - strandat 1639.625 kb on - strandat 1639.626 kb on + strandat 1639.626 kb on + strandat 1639.630 kb on - strandat 1639.631 kb on + strandat 1639.631 kb on + strandat 1639.681 kb on - strandat 1639.699 kb on + strandat 1639.713 kb on - strandat 1639.714 kb on + strandat 1639.717 kb on - strand, within MMP_RS08745at 1639.736 kb on - strand, within MMP_RS08745at 1639.810 kb on - strand, within MMP_RS08745at 1639.874 kb on - strand, within MMP_RS08745at 1639.880 kb on - strand, within MMP_RS08745at 1639.881 kb on + strand, within MMP_RS08745at 1639.882 kb on - strand, within MMP_RS08745at 1639.883 kb on + strand, within MMP_RS08745at 1639.883 kb on + strand, within MMP_RS08745at 1639.883 kb on + strand, within MMP_RS08745at 1639.885 kb on - strand, within MMP_RS08745at 1639.886 kb on + strand, within MMP_RS08745at 1639.886 kb on + strand, within MMP_RS08745at 1639.887 kb on - strand, within MMP_RS08745at 1639.889 kb on - strand, within MMP_RS08745at 1639.889 kb on - strand, within MMP_RS08745at 1639.931 kb on - strand, within MMP_RS08745at 1640.109 kb on + strand, within MMP_RS08745at 1640.109 kb on + strand, within MMP_RS08745at 1640.120 kb on + strand, within MMP_RS08745at 1640.196 kb on - strandat 1640.244 kb on + strandat 1640.244 kb on + strandat 1640.245 kb on - strandat 1640.245 kb on - strandat 1640.249 kb on - strandat 1640.250 kb on + strandat 1640.250 kb on + strandat 1640.250 kb on + strandat 1640.250 kb on + strandat 1640.252 kb on - strandat 1640.262 kb on - strandat 1640.412 kb on + strandat 1640.450 kb on - strandat 1640.450 kb on - strandat 1640.451 kb on + strandat 1640.451 kb on + strandat 1640.451 kb on + strandat 1640.455 kb on - strandat 1640.466 kb on - strandat 1640.479 kb on + strandat 1640.479 kb on + strandat 1640.601 kb on - strand, within MMP_RS08750at 1640.601 kb on - strand, within MMP_RS08750at 1640.602 kb on + strand, within MMP_RS08750at 1640.736 kb on - strandat 1640.752 kb on + strandat 1640.755 kb on + strandat 1640.756 kb on - strandat 1640.756 kb on - strandat 1640.757 kb on + strandat 1640.763 kb on - strandat 1640.925 kb on - strand, within MMP_RS08755at 1640.975 kb on + strand, within MMP_RS08755at 1640.981 kb on + strand, within MMP_RS08755at 1640.982 kb on - strand, within MMP_RS08755at 1641.010 kb on - strand, within MMP_RS08755at 1641.082 kb on - strand, within MMP_RS08755at 1641.084 kb on - strand, within MMP_RS08755at 1641.106 kb on + strand, within MMP_RS08755at 1641.166 kb on + strand, within MMP_RS08755

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,639,009 - -3.2
1,639,010 + -3.5
1,639,011 - -3.6
1,639,011 - -3.7
1,639,039 + -6.2
1,639,206 + -1.2
1,639,217 + +1.3
1,639,245 + -0.3
1,639,275 - -0.5
1,639,276 + -0.9
1,639,277 - +0.6
1,639,278 + -0.2
1,639,278 + -1.2
1,639,279 - -0.8
1,639,280 + -2.9
1,639,280 + +0.3
1,639,298 - -1.6
1,639,339 - -1.0
1,639,373 + +0.6
1,639,421 + +0.2
1,639,439 + +1.9
1,639,439 + +0.1
1,639,451 - -0.4
1,639,452 + +0.5
1,639,516 - +0.6
1,639,521 - -0.8
1,639,522 + -0.1
1,639,522 + +0.0
1,639,525 - +1.3
1,639,526 + +0.6
1,639,593 + +1.0
1,639,605 - -6.1
1,639,605 - -4.4
1,639,625 - -4.3
1,639,625 - -3.5
1,639,626 + -4.2
1,639,626 + -2.7
1,639,630 - -6.3
1,639,631 + -4.2
1,639,631 + -3.8
1,639,681 - -4.6
1,639,699 + -3.8
1,639,713 - -2.1
1,639,714 + -4.2
1,639,717 - MMP_RS08745 0.10 -4.1
1,639,736 - MMP_RS08745 0.14 -2.9
1,639,810 - MMP_RS08745 0.28 -3.1
1,639,874 - MMP_RS08745 0.39 -3.5
1,639,880 - MMP_RS08745 0.41 -3.6
1,639,881 + MMP_RS08745 0.41 -3.1
1,639,882 - MMP_RS08745 0.41 -3.5
1,639,883 + MMP_RS08745 0.41 -5.4
1,639,883 + MMP_RS08745 0.41 -2.8
1,639,883 + MMP_RS08745 0.41 -4.7
1,639,885 - MMP_RS08745 0.42 -1.6
1,639,886 + MMP_RS08745 0.42 -2.7
1,639,886 + MMP_RS08745 0.42 -4.0
1,639,887 - MMP_RS08745 0.42 -2.7
1,639,889 - MMP_RS08745 0.42 -2.2
1,639,889 - MMP_RS08745 0.42 -3.2
1,639,931 - MMP_RS08745 0.50 -3.6
1,640,109 + MMP_RS08745 0.83 -5.2
1,640,109 + MMP_RS08745 0.83 -2.6
1,640,120 + MMP_RS08745 0.85 -4.5
1,640,196 - +0.5
1,640,244 + +1.2
1,640,244 + -0.4
1,640,245 - +0.6
1,640,245 - +0.5
1,640,249 - +0.8
1,640,250 + +0.4
1,640,250 + +1.4
1,640,250 + +0.8
1,640,250 + +0.0
1,640,252 - -1.0
1,640,262 - +0.0
1,640,412 + +1.4
1,640,450 - +0.1
1,640,450 - +0.3
1,640,451 + -0.5
1,640,451 + -0.4
1,640,451 + +1.0
1,640,455 - +0.0
1,640,466 - +0.9
1,640,479 + +0.6
1,640,479 + +0.7
1,640,601 - MMP_RS08750 0.38 -4.8
1,640,601 - MMP_RS08750 0.38 +0.1
1,640,602 + MMP_RS08750 0.39 +0.4
1,640,736 - -1.5
1,640,752 + -0.7
1,640,755 + -0.6
1,640,756 - +0.7
1,640,756 - +0.0
1,640,757 + +1.5
1,640,763 - -0.1
1,640,925 - MMP_RS08755 0.13 -0.7
1,640,975 + MMP_RS08755 0.16 +0.7
1,640,981 + MMP_RS08755 0.16 +0.6
1,640,982 - MMP_RS08755 0.16 -0.7
1,641,010 - MMP_RS08755 0.18 +1.2
1,641,082 - MMP_RS08755 0.23 +0.2
1,641,084 - MMP_RS08755 0.23 -0.3
1,641,106 + MMP_RS08755 0.24 +0.1
1,641,166 + MMP_RS08755 0.28 +0.9

Or see this region's nucleotide sequence