Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08435

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08425 and MMP_RS08430 overlap by 11 nucleotidesMMP_RS08430 and MMP_RS08435 are separated by 76 nucleotidesMMP_RS08435 and MMP_RS08440 are separated by 6 nucleotidesMMP_RS08440 and MMP_RS08445 are separated by 24 nucleotides MMP_RS08425: MMP_RS08425 - methionine adenosyltransferase, at 1,582,001 to 1,583,218 _RS08425 MMP_RS08430: MMP_RS08430 - HAD family hydrolase, at 1,583,208 to 1,584,014 _RS08430 MMP_RS08435: MMP_RS08435 - Era-like GTP-binding protein, at 1,584,091 to 1,584,645 _RS08435 MMP_RS08440: MMP_RS08440 - cell division protein SepF, at 1,584,652 to 1,585,041 _RS08440 MMP_RS08445: MMP_RS08445 - DUF2099 family protein, at 1,585,066 to 1,585,917 _RS08445 Position (kb) 1584 1585Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1583.206 kb on + strandat 1583.206 kb on + strandat 1583.209 kb on - strandat 1583.209 kb on - strandat 1583.209 kb on - strandat 1583.210 kb on + strandat 1583.210 kb on + strandat 1583.217 kb on + strandat 1583.253 kb on - strandat 1583.254 kb on + strandat 1583.256 kb on + strandat 1583.263 kb on + strandat 1583.347 kb on + strand, within MMP_RS08430at 1583.621 kb on - strand, within MMP_RS08430at 1583.622 kb on + strand, within MMP_RS08430at 1583.624 kb on + strand, within MMP_RS08430at 1583.624 kb on + strand, within MMP_RS08430at 1583.628 kb on - strand, within MMP_RS08430at 1583.646 kb on + strand, within MMP_RS08430at 1583.646 kb on + strand, within MMP_RS08430at 1583.967 kb on - strandat 1583.973 kb on - strandat 1583.974 kb on + strandat 1584.034 kb on + strandat 1584.036 kb on - strandat 1584.037 kb on + strandat 1584.037 kb on + strandat 1584.055 kb on - strandat 1584.058 kb on - strandat 1584.060 kb on - strandat 1584.068 kb on + strandat 1584.310 kb on - strand, within MMP_RS08435at 1584.324 kb on - strand, within MMP_RS08435at 1584.422 kb on - strand, within MMP_RS08435at 1584.481 kb on + strand, within MMP_RS08435at 1584.593 kb on + strandat 1584.614 kb on - strandat 1584.714 kb on - strand, within MMP_RS08440at 1584.715 kb on + strand, within MMP_RS08440at 1584.815 kb on - strand, within MMP_RS08440at 1584.816 kb on + strand, within MMP_RS08440at 1584.948 kb on + strand, within MMP_RS08440at 1585.063 kb on - strandat 1585.453 kb on + strand, within MMP_RS08445at 1585.453 kb on + strand, within MMP_RS08445at 1585.470 kb on + strand, within MMP_RS08445

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,583,206 + +0.5
1,583,206 + -3.6
1,583,209 - -0.1
1,583,209 - +1.2
1,583,209 - -0.4
1,583,210 + +0.8
1,583,210 + +0.2
1,583,217 + +0.8
1,583,253 - -2.3
1,583,254 + +1.4
1,583,256 + -0.5
1,583,263 + -0.6
1,583,347 + MMP_RS08430 0.17 +0.7
1,583,621 - MMP_RS08430 0.51 -4.4
1,583,622 + MMP_RS08430 0.51 +1.3
1,583,624 + MMP_RS08430 0.52 +1.0
1,583,624 + MMP_RS08430 0.52 +0.6
1,583,628 - MMP_RS08430 0.52 +1.7
1,583,646 + MMP_RS08430 0.54 -0.6
1,583,646 + MMP_RS08430 0.54 +2.0
1,583,967 - +0.9
1,583,973 - -0.4
1,583,974 + -1.9
1,584,034 + +1.9
1,584,036 - +0.6
1,584,037 + +0.4
1,584,037 + +1.9
1,584,055 - -4.7
1,584,058 - -4.3
1,584,060 - -5.6
1,584,068 + -1.9
1,584,310 - MMP_RS08435 0.39 -3.7
1,584,324 - MMP_RS08435 0.42 -3.6
1,584,422 - MMP_RS08435 0.60 -3.5
1,584,481 + MMP_RS08435 0.70 -4.5
1,584,593 + -3.3
1,584,614 - -4.4
1,584,714 - MMP_RS08440 0.16 -2.9
1,584,715 + MMP_RS08440 0.16 -3.6
1,584,815 - MMP_RS08440 0.42 -3.7
1,584,816 + MMP_RS08440 0.42 -4.5
1,584,948 + MMP_RS08440 0.76 -4.8
1,585,063 - -3.0
1,585,453 + MMP_RS08445 0.45 -0.7
1,585,453 + MMP_RS08445 0.45 -5.5
1,585,470 + MMP_RS08445 0.47 -3.3

Or see this region's nucleotide sequence