Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08320

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08315 and MMP_RS08320 are separated by 140 nucleotidesMMP_RS08320 and MMP_RS08325 are separated by 12 nucleotidesMMP_RS08325 and MMP_RS08330 are separated by 40 nucleotides MMP_RS08315: MMP_RS08315 - S-methyl-5-thioribose-1-phosphate isomerase, at 1,563,295 to 1,564,260 _RS08315 MMP_RS08320: MMP_RS08320 - molybdopterin molybdotransferase MoeA, at 1,564,401 to 1,565,609 _RS08320 MMP_RS08325: MMP_RS08325 - hypothetical protein, at 1,565,622 to 1,565,915 _RS08325 MMP_RS08330: MMP_RS08330 - NADH-quinone oxidoreductase subunit H, at 1,565,956 to 1,566,951 _RS08330 Position (kb) 1564 1565 1566Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 1563.425 kb on + strand, within MMP_RS08315at 1563.457 kb on + strand, within MMP_RS08315at 1563.745 kb on - strand, within MMP_RS08315at 1563.746 kb on + strand, within MMP_RS08315at 1564.169 kb on - strandat 1564.210 kb on - strandat 1564.210 kb on - strandat 1564.239 kb on - strandat 1564.239 kb on - strandat 1564.240 kb on + strandat 1564.274 kb on - strandat 1564.274 kb on - strandat 1564.275 kb on + strandat 1564.275 kb on + strandat 1564.275 kb on + strandat 1564.277 kb on + strandat 1564.278 kb on - strandat 1564.278 kb on - strandat 1564.279 kb on + strandat 1564.290 kb on + strandat 1564.299 kb on + strandat 1564.316 kb on - strandat 1564.482 kb on + strandat 1564.744 kb on + strand, within MMP_RS08320at 1564.745 kb on - strand, within MMP_RS08320at 1564.745 kb on - strand, within MMP_RS08320at 1564.775 kb on + strand, within MMP_RS08320at 1564.778 kb on - strand, within MMP_RS08320at 1564.779 kb on + strand, within MMP_RS08320at 1564.779 kb on + strand, within MMP_RS08320at 1565.018 kb on - strand, within MMP_RS08320at 1565.051 kb on + strand, within MMP_RS08320at 1565.542 kb on + strandat 1565.598 kb on - strandat 1565.607 kb on - strandat 1565.628 kb on - strandat 1565.677 kb on + strand, within MMP_RS08325at 1565.680 kb on - strand, within MMP_RS08325at 1565.698 kb on + strand, within MMP_RS08325at 1565.703 kb on + strand, within MMP_RS08325at 1565.721 kb on + strand, within MMP_RS08325at 1565.732 kb on - strand, within MMP_RS08325at 1565.732 kb on - strand, within MMP_RS08325at 1565.739 kb on - strand, within MMP_RS08325at 1565.739 kb on - strand, within MMP_RS08325at 1565.740 kb on + strand, within MMP_RS08325at 1565.752 kb on - strand, within MMP_RS08325at 1565.752 kb on - strand, within MMP_RS08325at 1565.752 kb on - strand, within MMP_RS08325at 1565.752 kb on - strand, within MMP_RS08325at 1565.753 kb on + strand, within MMP_RS08325at 1565.753 kb on + strand, within MMP_RS08325at 1565.753 kb on + strand, within MMP_RS08325at 1565.753 kb on + strand, within MMP_RS08325at 1565.760 kb on + strand, within MMP_RS08325at 1565.878 kb on - strand, within MMP_RS08325at 1565.902 kb on + strandat 1565.951 kb on + strandat 1566.053 kb on - strandat 1566.053 kb on - strandat 1566.117 kb on - strand, within MMP_RS08330at 1566.131 kb on + strand, within MMP_RS08330at 1566.153 kb on + strand, within MMP_RS08330at 1566.243 kb on - strand, within MMP_RS08330at 1566.253 kb on - strand, within MMP_RS08330at 1566.255 kb on - strand, within MMP_RS08330at 1566.310 kb on + strand, within MMP_RS08330at 1566.310 kb on + strand, within MMP_RS08330at 1566.310 kb on + strand, within MMP_RS08330at 1566.321 kb on - strand, within MMP_RS08330at 1566.322 kb on + strand, within MMP_RS08330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
remove
1,563,425 + MMP_RS08315 0.13 +1.8
1,563,457 + MMP_RS08315 0.17 +0.7
1,563,745 - MMP_RS08315 0.47 +1.5
1,563,746 + MMP_RS08315 0.47 +2.2
1,564,169 - +1.8
1,564,210 - +1.6
1,564,210 - +2.0
1,564,239 - +2.5
1,564,239 - +2.8
1,564,240 + +2.1
1,564,274 - +1.1
1,564,274 - +1.1
1,564,275 + +1.4
1,564,275 + +2.6
1,564,275 + +2.7
1,564,277 + +2.4
1,564,278 - +1.0
1,564,278 - -0.8
1,564,279 + +2.4
1,564,290 + +2.2
1,564,299 + +1.4
1,564,316 - -1.0
1,564,482 + -6.8
1,564,744 + MMP_RS08320 0.28 -5.2
1,564,745 - MMP_RS08320 0.28 -1.1
1,564,745 - MMP_RS08320 0.28 -3.6
1,564,775 + MMP_RS08320 0.31 -4.2
1,564,778 - MMP_RS08320 0.31 -4.1
1,564,779 + MMP_RS08320 0.31 -6.0
1,564,779 + MMP_RS08320 0.31 -6.1
1,565,018 - MMP_RS08320 0.51 -4.3
1,565,051 + MMP_RS08320 0.54 -5.5
1,565,542 + -4.6
1,565,598 - -6.0
1,565,607 - -0.6
1,565,628 - +1.0
1,565,677 + MMP_RS08325 0.19 +0.4
1,565,680 - MMP_RS08325 0.20 +1.6
1,565,698 + MMP_RS08325 0.26 +0.9
1,565,703 + MMP_RS08325 0.28 +1.6
1,565,721 + MMP_RS08325 0.34 +0.7
1,565,732 - MMP_RS08325 0.37 +0.9
1,565,732 - MMP_RS08325 0.37 +0.8
1,565,739 - MMP_RS08325 0.40 +0.3
1,565,739 - MMP_RS08325 0.40 +0.2
1,565,740 + MMP_RS08325 0.40 +1.2
1,565,752 - MMP_RS08325 0.44 +1.4
1,565,752 - MMP_RS08325 0.44 +0.9
1,565,752 - MMP_RS08325 0.44 +0.2
1,565,752 - MMP_RS08325 0.44 -0.0
1,565,753 + MMP_RS08325 0.45 +1.0
1,565,753 + MMP_RS08325 0.45 -0.4
1,565,753 + MMP_RS08325 0.45 -0.6
1,565,753 + MMP_RS08325 0.45 +1.6
1,565,760 + MMP_RS08325 0.47 +0.6
1,565,878 - MMP_RS08325 0.87 +0.3
1,565,902 + +1.4
1,565,951 + +0.7
1,566,053 - -3.1
1,566,053 - +0.3
1,566,117 - MMP_RS08330 0.16 -0.2
1,566,131 + MMP_RS08330 0.18 +1.5
1,566,153 + MMP_RS08330 0.20 -3.3
1,566,243 - MMP_RS08330 0.29 -2.8
1,566,253 - MMP_RS08330 0.30 +1.2
1,566,255 - MMP_RS08330 0.30 -5.1
1,566,310 + MMP_RS08330 0.36 -3.6
1,566,310 + MMP_RS08330 0.36 -4.0
1,566,310 + MMP_RS08330 0.36 -0.8
1,566,321 - MMP_RS08330 0.37 -2.9
1,566,322 + MMP_RS08330 0.37 +1.1

Or see this region's nucleotide sequence