Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07635

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07625 and MMP_RS07630 are separated by 63 nucleotidesMMP_RS07630 and MMP_RS07635 are separated by 2 nucleotidesMMP_RS07635 and MMP_RS07640 are separated by 23 nucleotidesMMP_RS07640 and MMP_RS07645 are separated by 124 nucleotides MMP_RS07625: MMP_RS07625 - cobalt ECF transporter T component CbiQ, at 1,443,190 to 1,443,963 _RS07625 MMP_RS07630: MMP_RS07630 - ATP-binding cassette domain-containing protein, at 1,444,027 to 1,444,863 _RS07630 MMP_RS07635: MMP_RS07635 - MogA/MoaB family molybdenum cofactor biosynthesis protein, at 1,444,866 to 1,445,351 _RS07635 MMP_RS07640: MMP_RS07640 - mechanosensitive ion channel family protein, at 1,445,375 to 1,446,178 _RS07640 MMP_RS07645: MMP_RS07645 - aldehyde dehydrogenase family protein, at 1,446,303 to 1,447,700 _RS07645 Position (kb) 1444 1445 1446Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1443.900 kb on - strandat 1443.900 kb on - strandat 1443.900 kb on - strandat 1443.936 kb on + strandat 1443.947 kb on + strandat 1443.992 kb on - strandat 1443.998 kb on - strandat 1444.006 kb on - strandat 1444.006 kb on - strandat 1444.007 kb on + strandat 1444.254 kb on + strand, within MMP_RS07630at 1444.280 kb on - strand, within MMP_RS07630at 1444.740 kb on + strand, within MMP_RS07630at 1444.810 kb on - strandat 1444.816 kb on + strandat 1444.910 kb on + strandat 1445.008 kb on - strand, within MMP_RS07635at 1445.032 kb on - strand, within MMP_RS07635at 1445.033 kb on + strand, within MMP_RS07635at 1445.051 kb on - strand, within MMP_RS07635at 1445.051 kb on - strand, within MMP_RS07635at 1445.052 kb on + strand, within MMP_RS07635at 1445.064 kb on + strand, within MMP_RS07635at 1445.064 kb on + strand, within MMP_RS07635at 1445.141 kb on - strand, within MMP_RS07635at 1445.142 kb on + strand, within MMP_RS07635at 1445.142 kb on + strand, within MMP_RS07635at 1445.146 kb on + strand, within MMP_RS07635at 1445.168 kb on - strand, within MMP_RS07635at 1445.169 kb on + strand, within MMP_RS07635at 1445.173 kb on - strand, within MMP_RS07635at 1445.176 kb on - strand, within MMP_RS07635at 1445.208 kb on - strand, within MMP_RS07635at 1445.360 kb on - strandat 1445.712 kb on + strand, within MMP_RS07640at 1445.735 kb on - strand, within MMP_RS07640at 1445.873 kb on + strand, within MMP_RS07640at 1445.873 kb on + strand, within MMP_RS07640at 1445.976 kb on + strand, within MMP_RS07640at 1446.006 kb on + strand, within MMP_RS07640at 1446.071 kb on + strand, within MMP_RS07640at 1446.145 kb on - strandat 1446.204 kb on + strandat 1446.228 kb on - strandat 1446.233 kb on - strandat 1446.252 kb on + strandat 1446.256 kb on - strandat 1446.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,443,900 - -1.8
1,443,900 - -4.6
1,443,900 - -3.6
1,443,936 + -5.2
1,443,947 + -0.8
1,443,992 - -4.0
1,443,998 - -4.7
1,444,006 - -4.3
1,444,006 - -6.7
1,444,007 + -3.4
1,444,254 + MMP_RS07630 0.27 -1.3
1,444,280 - MMP_RS07630 0.30 -3.4
1,444,740 + MMP_RS07630 0.85 -2.8
1,444,810 - -4.1
1,444,816 + -4.7
1,444,910 + -5.2
1,445,008 - MMP_RS07635 0.29 -5.8
1,445,032 - MMP_RS07635 0.34 -5.2
1,445,033 + MMP_RS07635 0.34 -2.5
1,445,051 - MMP_RS07635 0.38 -6.0
1,445,051 - MMP_RS07635 0.38 -4.7
1,445,052 + MMP_RS07635 0.38 -3.4
1,445,064 + MMP_RS07635 0.41 -6.0
1,445,064 + MMP_RS07635 0.41 -2.8
1,445,141 - MMP_RS07635 0.57 -3.5
1,445,142 + MMP_RS07635 0.57 -5.7
1,445,142 + MMP_RS07635 0.57 -5.2
1,445,146 + MMP_RS07635 0.58 -4.0
1,445,168 - MMP_RS07635 0.62 -4.5
1,445,169 + MMP_RS07635 0.62 -4.2
1,445,173 - MMP_RS07635 0.63 -3.7
1,445,176 - MMP_RS07635 0.64 -4.9
1,445,208 - MMP_RS07635 0.70 -5.1
1,445,360 - +1.5
1,445,712 + MMP_RS07640 0.42 +1.4
1,445,735 - MMP_RS07640 0.45 +1.1
1,445,873 + MMP_RS07640 0.62 +1.3
1,445,873 + MMP_RS07640 0.62 +0.3
1,445,976 + MMP_RS07640 0.75 +0.5
1,446,006 + MMP_RS07640 0.78 +0.3
1,446,071 + MMP_RS07640 0.87 +0.5
1,446,145 - +0.4
1,446,204 + +1.7
1,446,228 - +0.2
1,446,233 - +0.8
1,446,252 + +0.4
1,446,256 - +1.9
1,446,272 + +1.1

Or see this region's nucleotide sequence