Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07625 and MMP_RS07630 are separated by 63 nucleotides MMP_RS07630 and MMP_RS07635 are separated by 2 nucleotides MMP_RS07635 and MMP_RS07640 are separated by 23 nucleotides MMP_RS07640 and MMP_RS07645 are separated by 124 nucleotides
MMP_RS07625: MMP_RS07625 - cobalt ECF transporter T component CbiQ, at 1,443,190 to 1,443,963
_RS07625
MMP_RS07630: MMP_RS07630 - ATP-binding cassette domain-containing protein, at 1,444,027 to 1,444,863
_RS07630
MMP_RS07635: MMP_RS07635 - MogA/MoaB family molybdenum cofactor biosynthesis protein, at 1,444,866 to 1,445,351
_RS07635
MMP_RS07640: MMP_RS07640 - mechanosensitive ion channel family protein, at 1,445,375 to 1,446,178
_RS07640
MMP_RS07645: MMP_RS07645 - aldehyde dehydrogenase family protein, at 1,446,303 to 1,447,700
_RS07645
Position (kb)
1444
1445
1446 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 1443.900 kb on - strand at 1443.900 kb on - strand at 1443.900 kb on - strand at 1443.936 kb on + strand at 1443.947 kb on + strand at 1443.992 kb on - strand at 1443.998 kb on - strand at 1444.006 kb on - strand at 1444.006 kb on - strand at 1444.007 kb on + strand at 1444.254 kb on + strand, within MMP_RS07630 at 1444.280 kb on - strand, within MMP_RS07630 at 1444.740 kb on + strand, within MMP_RS07630 at 1444.810 kb on - strand at 1444.816 kb on + strand at 1444.910 kb on + strand at 1445.008 kb on - strand, within MMP_RS07635 at 1445.032 kb on - strand, within MMP_RS07635 at 1445.033 kb on + strand, within MMP_RS07635 at 1445.051 kb on - strand, within MMP_RS07635 at 1445.051 kb on - strand, within MMP_RS07635 at 1445.052 kb on + strand, within MMP_RS07635 at 1445.064 kb on + strand, within MMP_RS07635 at 1445.064 kb on + strand, within MMP_RS07635 at 1445.141 kb on - strand, within MMP_RS07635 at 1445.142 kb on + strand, within MMP_RS07635 at 1445.142 kb on + strand, within MMP_RS07635 at 1445.146 kb on + strand, within MMP_RS07635 at 1445.168 kb on - strand, within MMP_RS07635 at 1445.169 kb on + strand, within MMP_RS07635 at 1445.173 kb on - strand, within MMP_RS07635 at 1445.176 kb on - strand, within MMP_RS07635 at 1445.208 kb on - strand, within MMP_RS07635 at 1445.360 kb on - strand at 1445.712 kb on + strand, within MMP_RS07640 at 1445.735 kb on - strand, within MMP_RS07640 at 1445.873 kb on + strand, within MMP_RS07640 at 1445.873 kb on + strand, within MMP_RS07640 at 1445.976 kb on + strand, within MMP_RS07640 at 1446.006 kb on + strand, within MMP_RS07640 at 1446.071 kb on + strand, within MMP_RS07640 at 1446.145 kb on - strand at 1446.204 kb on + strand at 1446.228 kb on - strand at 1446.233 kb on - strand at 1446.252 kb on + strand at 1446.256 kb on - strand at 1446.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 1,443,900 - -1.8 1,443,900 - -4.6 1,443,900 - -3.6 1,443,936 + -5.2 1,443,947 + -0.8 1,443,992 - -4.0 1,443,998 - -4.7 1,444,006 - -4.3 1,444,006 - -6.7 1,444,007 + -3.4 1,444,254 + MMP_RS07630 0.27 -1.3 1,444,280 - MMP_RS07630 0.30 -3.4 1,444,740 + MMP_RS07630 0.85 -2.8 1,444,810 - -4.1 1,444,816 + -4.7 1,444,910 + -5.2 1,445,008 - MMP_RS07635 0.29 -5.8 1,445,032 - MMP_RS07635 0.34 -5.2 1,445,033 + MMP_RS07635 0.34 -2.5 1,445,051 - MMP_RS07635 0.38 -6.0 1,445,051 - MMP_RS07635 0.38 -4.7 1,445,052 + MMP_RS07635 0.38 -3.4 1,445,064 + MMP_RS07635 0.41 -6.0 1,445,064 + MMP_RS07635 0.41 -2.8 1,445,141 - MMP_RS07635 0.57 -3.5 1,445,142 + MMP_RS07635 0.57 -5.7 1,445,142 + MMP_RS07635 0.57 -5.2 1,445,146 + MMP_RS07635 0.58 -4.0 1,445,168 - MMP_RS07635 0.62 -4.5 1,445,169 + MMP_RS07635 0.62 -4.2 1,445,173 - MMP_RS07635 0.63 -3.7 1,445,176 - MMP_RS07635 0.64 -4.9 1,445,208 - MMP_RS07635 0.70 -5.1 1,445,360 - +1.5 1,445,712 + MMP_RS07640 0.42 +1.4 1,445,735 - MMP_RS07640 0.45 +1.1 1,445,873 + MMP_RS07640 0.62 +1.3 1,445,873 + MMP_RS07640 0.62 +0.3 1,445,976 + MMP_RS07640 0.75 +0.5 1,446,006 + MMP_RS07640 0.78 +0.3 1,446,071 + MMP_RS07640 0.87 +0.5 1,446,145 - +0.4 1,446,204 + +1.7 1,446,228 - +0.2 1,446,233 - +0.8 1,446,252 + +0.4 1,446,256 - +1.9 1,446,272 + +1.1
Or see this region's nucleotide sequence