Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07555

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07550 and MMP_RS07555 are separated by 54 nucleotidesMMP_RS07555 and MMP_RS07560 are separated by 173 nucleotidesMMP_RS07560 and MMP_RS07565 are separated by 129 nucleotidesMMP_RS07565 and MMP_RS07570 are separated by 101 nucleotides MMP_RS07550: MMP_RS07550 - L-serine ammonia-lyase iron-sulfur-dependent subunit alpha, at 1,428,750 to 1,429,940 _RS07550 MMP_RS07555: MMP_RS07555 - monovalent cation/H+ antiporter subunit E, at 1,429,995 to 1,430,315 _RS07555 MMP_RS07560: MMP_RS07560 - prefoldin subunit alpha, at 1,430,489 to 1,430,923 _RS07560 MMP_RS07565: MMP_RS07565 - tRNA-Val, at 1,431,053 to 1,431,129 _RS07565 MMP_RS07570: MMP_RS07570 - nucleotidyltransferase family protein, at 1,431,231 to 1,432,280 _RS07570 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1429.071 kb on - strand, within MMP_RS07550at 1429.107 kb on + strand, within MMP_RS07550at 1429.299 kb on + strand, within MMP_RS07550at 1429.307 kb on - strand, within MMP_RS07550at 1429.386 kb on - strand, within MMP_RS07550at 1429.387 kb on + strand, within MMP_RS07550at 1429.418 kb on - strand, within MMP_RS07550at 1429.418 kb on - strand, within MMP_RS07550at 1429.418 kb on - strand, within MMP_RS07550at 1429.419 kb on + strand, within MMP_RS07550at 1429.419 kb on + strand, within MMP_RS07550at 1429.420 kb on - strand, within MMP_RS07550at 1429.421 kb on + strand, within MMP_RS07550at 1429.494 kb on + strand, within MMP_RS07550at 1429.641 kb on - strand, within MMP_RS07550at 1429.661 kb on - strand, within MMP_RS07550at 1429.714 kb on + strand, within MMP_RS07550at 1429.743 kb on + strand, within MMP_RS07550at 1429.784 kb on - strand, within MMP_RS07550at 1429.917 kb on - strandat 1429.940 kb on - strandat 1429.978 kb on + strandat 1430.013 kb on - strandat 1430.017 kb on - strandat 1430.018 kb on + strandat 1430.068 kb on + strand, within MMP_RS07555at 1430.350 kb on - strandat 1430.354 kb on - strandat 1430.355 kb on + strandat 1430.356 kb on - strandat 1430.356 kb on - strandat 1430.358 kb on - strandat 1430.359 kb on + strandat 1430.359 kb on + strandat 1430.359 kb on + strandat 1430.360 kb on - strandat 1430.360 kb on - strandat 1430.361 kb on + strandat 1430.361 kb on + strandat 1430.364 kb on - strandat 1430.452 kb on - strandat 1430.453 kb on + strandat 1430.456 kb on - strandat 1430.456 kb on - strandat 1430.555 kb on + strand, within MMP_RS07560at 1430.745 kb on - strand, within MMP_RS07560at 1430.746 kb on + strand, within MMP_RS07560at 1430.746 kb on + strand, within MMP_RS07560at 1430.809 kb on + strand, within MMP_RS07560at 1430.809 kb on + strand, within MMP_RS07560at 1430.921 kb on - strandat 1430.973 kb on + strandat 1431.043 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,429,071 - MMP_RS07550 0.27 +0.8
1,429,107 + MMP_RS07550 0.30 -0.0
1,429,299 + MMP_RS07550 0.46 +0.9
1,429,307 - MMP_RS07550 0.47 +1.4
1,429,386 - MMP_RS07550 0.53 +0.1
1,429,387 + MMP_RS07550 0.53 +1.2
1,429,418 - MMP_RS07550 0.56 -0.2
1,429,418 - MMP_RS07550 0.56 -4.3
1,429,418 - MMP_RS07550 0.56 +0.5
1,429,419 + MMP_RS07550 0.56 +1.0
1,429,419 + MMP_RS07550 0.56 +1.8
1,429,420 - MMP_RS07550 0.56 +1.2
1,429,421 + MMP_RS07550 0.56 +1.0
1,429,494 + MMP_RS07550 0.62 +2.2
1,429,641 - MMP_RS07550 0.75 +1.4
1,429,661 - MMP_RS07550 0.76 +0.7
1,429,714 + MMP_RS07550 0.81 -2.5
1,429,743 + MMP_RS07550 0.83 +0.8
1,429,784 - MMP_RS07550 0.87 +1.9
1,429,917 - +0.2
1,429,940 - +1.3
1,429,978 + -4.1
1,430,013 - +0.3
1,430,017 - +1.1
1,430,018 + -3.4
1,430,068 + MMP_RS07555 0.23 -3.8
1,430,350 - -0.1
1,430,354 - -0.6
1,430,355 + -3.3
1,430,356 - -0.7
1,430,356 - -0.3
1,430,358 - -1.7
1,430,359 + +1.8
1,430,359 + -0.9
1,430,359 + +1.2
1,430,360 - +0.1
1,430,360 - -0.9
1,430,361 + -0.8
1,430,361 + -0.5
1,430,364 - -4.4
1,430,452 - -0.8
1,430,453 + -0.1
1,430,456 - -0.3
1,430,456 - +0.3
1,430,555 + MMP_RS07560 0.15 -0.4
1,430,745 - MMP_RS07560 0.59 +0.5
1,430,746 + MMP_RS07560 0.59 -1.2
1,430,746 + MMP_RS07560 0.59 -0.4
1,430,809 + MMP_RS07560 0.74 +0.7
1,430,809 + MMP_RS07560 0.74 -2.0
1,430,921 - -0.3
1,430,973 + +0.6
1,431,043 + +0.8

Or see this region's nucleotide sequence