Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07445

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07435 and MMP_RS07440 are separated by 39 nucleotidesMMP_RS07440 and MMP_RS07445 are separated by 184 nucleotidesMMP_RS07445 and MMP_RS07450 are separated by 5 nucleotidesMMP_RS07450 and MMP_RS07455 overlap by 14 nucleotidesMMP_RS07455 and MMP_RS07460 are separated by 0 nucleotides MMP_RS07435: MMP_RS07435 - GMP synthase subunit A, at 1,416,060 to 1,416,629 _RS07435 MMP_RS07440: MMP_RS07440 - ZPR1 zinc finger domain-containing protein, at 1,416,669 to 1,417,241 _RS07440 MMP_RS07445: MMP_RS07445 - helix-turn-helix domain-containing protein, at 1,417,426 to 1,418,064 _RS07445 MMP_RS07450: MMP_RS07450 - energy-converting NiFe hydrogenase A subunit EhaA, at 1,418,070 to 1,418,336 _RS07450 MMP_RS07455: MMP_RS07455 - hypothetical protein, at 1,418,323 to 1,418,814 _RS07455 MMP_RS07460: MMP_RS07460 - DUF2109 domain-containing protein, at 1,418,815 to 1,419,081 _RS07460 Position (kb) 1417 1418 1419Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1416.446 kb on + strand, within MMP_RS07435at 1416.627 kb on - strandat 1416.627 kb on - strandat 1416.640 kb on - strandat 1416.685 kb on + strandat 1416.686 kb on - strandat 1416.686 kb on - strandat 1416.689 kb on - strandat 1417.056 kb on + strandat 1417.226 kb on - strandat 1417.226 kb on - strandat 1417.350 kb on + strandat 1417.354 kb on + strandat 1417.458 kb on - strandat 1417.627 kb on + strand, within MMP_RS07445at 1417.679 kb on - strand, within MMP_RS07445at 1417.763 kb on + strand, within MMP_RS07445at 1417.783 kb on - strand, within MMP_RS07445at 1417.783 kb on - strand, within MMP_RS07445at 1417.784 kb on + strand, within MMP_RS07445at 1417.789 kb on + strand, within MMP_RS07445at 1417.790 kb on - strand, within MMP_RS07445at 1417.791 kb on + strand, within MMP_RS07445at 1417.791 kb on + strand, within MMP_RS07445at 1417.795 kb on + strand, within MMP_RS07445at 1417.802 kb on + strand, within MMP_RS07445at 1417.914 kb on - strand, within MMP_RS07445at 1417.963 kb on + strand, within MMP_RS07445at 1417.986 kb on + strand, within MMP_RS07445at 1418.023 kb on - strandat 1418.024 kb on + strandat 1418.028 kb on - strandat 1418.085 kb on + strandat 1418.089 kb on + strandat 1418.117 kb on + strandat 1418.231 kb on + strandat 1418.239 kb on - strandat 1418.261 kb on + strandat 1418.319 kb on + strandat 1418.327 kb on - strandat 1418.348 kb on - strandat 1418.507 kb on - strandat 1418.868 kb on + strandat 1418.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,416,446 + MMP_RS07435 0.68 -1.8
1,416,627 - +0.5
1,416,627 - +0.0
1,416,640 - +0.1
1,416,685 + -1.9
1,416,686 - +0.0
1,416,686 - +0.1
1,416,689 - -0.3
1,417,056 + -3.1
1,417,226 - -3.6
1,417,226 - -3.0
1,417,350 + -4.7
1,417,354 + -5.5
1,417,458 - -3.5
1,417,627 + MMP_RS07445 0.31 -5.1
1,417,679 - MMP_RS07445 0.40 -4.6
1,417,763 + MMP_RS07445 0.53 -4.0
1,417,783 - MMP_RS07445 0.56 -3.8
1,417,783 - MMP_RS07445 0.56 -3.2
1,417,784 + MMP_RS07445 0.56 -5.7
1,417,789 + MMP_RS07445 0.57 -5.6
1,417,790 - MMP_RS07445 0.57 -2.9
1,417,791 + MMP_RS07445 0.57 -5.9
1,417,791 + MMP_RS07445 0.57 -4.8
1,417,795 + MMP_RS07445 0.58 -5.4
1,417,802 + MMP_RS07445 0.59 -5.4
1,417,914 - MMP_RS07445 0.76 -4.7
1,417,963 + MMP_RS07445 0.84 -5.6
1,417,986 + MMP_RS07445 0.88 -6.5
1,418,023 - -3.9
1,418,024 + -2.4
1,418,028 - -2.9
1,418,085 + -4.7
1,418,089 + -3.8
1,418,117 + -4.3
1,418,231 + -6.3
1,418,239 - -3.2
1,418,261 + -3.7
1,418,319 + -4.6
1,418,327 - -3.1
1,418,348 - -3.2
1,418,507 - -3.4
1,418,868 + -1.1
1,418,953 - -3.5

Or see this region's nucleotide sequence