Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07195 and MMP_RS07200 are separated by 0 nucleotides MMP_RS07200 and MMP_RS07205 are separated by 18 nucleotides MMP_RS07205 and MMP_RS07210 are separated by 31 nucleotides MMP_RS07210 and MMP_RS07215 are separated by 142 nucleotides MMP_RS07215 and MMP_RS07220 are separated by 19 nucleotides
MMP_RS07195: MMP_RS07195 - M20 family metallo-hydrolase, at 1,381,339 to 1,382,586
_RS07195
MMP_RS07200: MMP_RS07200 - [5-(aminomethyl)furan-3-yl]methyl phosphate kinase, at 1,382,587 to 1,383,225
_RS07200
MMP_RS07205: MMP_RS07205 - zinc finger domain-containing protein, at 1,383,244 to 1,383,408
_RS07205
MMP_RS07210: MMP_RS07210 - elongation factor 1-beta, at 1,383,440 to 1,383,709
_RS07210
MMP_RS07215: MMP_RS07215 - hypothetical protein, at 1,383,852 to 1,384,010
_RS07215
MMP_RS07220: MMP_RS07220 - 50S ribosomal protein L22, at 1,384,030 to 1,384,491
_RS07220
Position (kb)
1382
1383
1384 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1381.608 kb on - strand, within MMP_RS07195 at 1381.611 kb on + strand, within MMP_RS07195 at 1381.772 kb on + strand, within MMP_RS07195 at 1381.773 kb on - strand, within MMP_RS07195 at 1381.839 kb on + strand, within MMP_RS07195 at 1382.075 kb on - strand, within MMP_RS07195 at 1382.116 kb on + strand, within MMP_RS07195 at 1382.217 kb on + strand, within MMP_RS07195 at 1382.304 kb on - strand, within MMP_RS07195 at 1382.529 kb on - strand at 1382.529 kb on - strand at 1382.530 kb on + strand at 1382.882 kb on - strand, within MMP_RS07200 at 1382.883 kb on + strand, within MMP_RS07200 at 1382.907 kb on - strand, within MMP_RS07200 at 1382.907 kb on - strand, within MMP_RS07200 at 1382.940 kb on - strand, within MMP_RS07200 at 1382.962 kb on - strand, within MMP_RS07200 at 1382.963 kb on + strand, within MMP_RS07200 at 1382.963 kb on + strand, within MMP_RS07200 at 1382.963 kb on + strand, within MMP_RS07200 at 1382.963 kb on + strand, within MMP_RS07200 at 1382.964 kb on - strand, within MMP_RS07200 at 1382.964 kb on - strand, within MMP_RS07200 at 1382.964 kb on - strand, within MMP_RS07200 at 1382.965 kb on + strand, within MMP_RS07200 at 1382.965 kb on + strand, within MMP_RS07200 at 1382.967 kb on + strand, within MMP_RS07200 at 1383.031 kb on - strand, within MMP_RS07200 at 1383.050 kb on - strand, within MMP_RS07200 at 1383.085 kb on + strand, within MMP_RS07200 at 1383.203 kb on + strand at 1383.596 kb on - strand at 1383.597 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 1,381,608 - MMP_RS07195 0.22 -0.6 1,381,611 + MMP_RS07195 0.22 +1.7 1,381,772 + MMP_RS07195 0.35 +1.2 1,381,773 - MMP_RS07195 0.35 -1.0 1,381,839 + MMP_RS07195 0.40 -0.3 1,382,075 - MMP_RS07195 0.59 -0.4 1,382,116 + MMP_RS07195 0.62 +1.6 1,382,217 + MMP_RS07195 0.70 +0.1 1,382,304 - MMP_RS07195 0.77 -0.4 1,382,529 - -1.0 1,382,529 - +1.0 1,382,530 + +1.6 1,382,882 - MMP_RS07200 0.46 -3.6 1,382,883 + MMP_RS07200 0.46 -2.7 1,382,907 - MMP_RS07200 0.50 -5.4 1,382,907 - MMP_RS07200 0.50 -4.5 1,382,940 - MMP_RS07200 0.55 -2.8 1,382,962 - MMP_RS07200 0.59 -4.0 1,382,963 + MMP_RS07200 0.59 -2.8 1,382,963 + MMP_RS07200 0.59 -3.7 1,382,963 + MMP_RS07200 0.59 -4.4 1,382,963 + MMP_RS07200 0.59 -3.1 1,382,964 - MMP_RS07200 0.59 -3.7 1,382,964 - MMP_RS07200 0.59 -3.6 1,382,964 - MMP_RS07200 0.59 -1.0 1,382,965 + MMP_RS07200 0.59 -3.8 1,382,965 + MMP_RS07200 0.59 -3.9 1,382,967 + MMP_RS07200 0.59 -3.1 1,383,031 - MMP_RS07200 0.69 -2.4 1,383,050 - MMP_RS07200 0.72 -2.9 1,383,085 + MMP_RS07200 0.78 -3.8 1,383,203 + -2.3 1,383,596 - -2.0 1,383,597 + -2.9
Or see this region's nucleotide sequence