Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07200

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07195 and MMP_RS07200 are separated by 0 nucleotidesMMP_RS07200 and MMP_RS07205 are separated by 18 nucleotidesMMP_RS07205 and MMP_RS07210 are separated by 31 nucleotidesMMP_RS07210 and MMP_RS07215 are separated by 142 nucleotidesMMP_RS07215 and MMP_RS07220 are separated by 19 nucleotides MMP_RS07195: MMP_RS07195 - M20 family metallo-hydrolase, at 1,381,339 to 1,382,586 _RS07195 MMP_RS07200: MMP_RS07200 - [5-(aminomethyl)furan-3-yl]methyl phosphate kinase, at 1,382,587 to 1,383,225 _RS07200 MMP_RS07205: MMP_RS07205 - zinc finger domain-containing protein, at 1,383,244 to 1,383,408 _RS07205 MMP_RS07210: MMP_RS07210 - elongation factor 1-beta, at 1,383,440 to 1,383,709 _RS07210 MMP_RS07215: MMP_RS07215 - hypothetical protein, at 1,383,852 to 1,384,010 _RS07215 MMP_RS07220: MMP_RS07220 - 50S ribosomal protein L22, at 1,384,030 to 1,384,491 _RS07220 Position (kb) 1382 1383 1384Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1381.608 kb on - strand, within MMP_RS07195at 1381.611 kb on + strand, within MMP_RS07195at 1381.772 kb on + strand, within MMP_RS07195at 1381.773 kb on - strand, within MMP_RS07195at 1381.839 kb on + strand, within MMP_RS07195at 1382.075 kb on - strand, within MMP_RS07195at 1382.116 kb on + strand, within MMP_RS07195at 1382.217 kb on + strand, within MMP_RS07195at 1382.304 kb on - strand, within MMP_RS07195at 1382.529 kb on - strandat 1382.529 kb on - strandat 1382.530 kb on + strandat 1382.882 kb on - strand, within MMP_RS07200at 1382.883 kb on + strand, within MMP_RS07200at 1382.907 kb on - strand, within MMP_RS07200at 1382.907 kb on - strand, within MMP_RS07200at 1382.940 kb on - strand, within MMP_RS07200at 1382.962 kb on - strand, within MMP_RS07200at 1382.963 kb on + strand, within MMP_RS07200at 1382.963 kb on + strand, within MMP_RS07200at 1382.963 kb on + strand, within MMP_RS07200at 1382.963 kb on + strand, within MMP_RS07200at 1382.964 kb on - strand, within MMP_RS07200at 1382.964 kb on - strand, within MMP_RS07200at 1382.964 kb on - strand, within MMP_RS07200at 1382.965 kb on + strand, within MMP_RS07200at 1382.965 kb on + strand, within MMP_RS07200at 1382.967 kb on + strand, within MMP_RS07200at 1383.031 kb on - strand, within MMP_RS07200at 1383.050 kb on - strand, within MMP_RS07200at 1383.085 kb on + strand, within MMP_RS07200at 1383.203 kb on + strandat 1383.596 kb on - strandat 1383.597 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,381,608 - MMP_RS07195 0.22 -0.6
1,381,611 + MMP_RS07195 0.22 +1.7
1,381,772 + MMP_RS07195 0.35 +1.2
1,381,773 - MMP_RS07195 0.35 -1.0
1,381,839 + MMP_RS07195 0.40 -0.3
1,382,075 - MMP_RS07195 0.59 -0.4
1,382,116 + MMP_RS07195 0.62 +1.6
1,382,217 + MMP_RS07195 0.70 +0.1
1,382,304 - MMP_RS07195 0.77 -0.4
1,382,529 - -1.0
1,382,529 - +1.0
1,382,530 + +1.6
1,382,882 - MMP_RS07200 0.46 -3.6
1,382,883 + MMP_RS07200 0.46 -2.7
1,382,907 - MMP_RS07200 0.50 -5.4
1,382,907 - MMP_RS07200 0.50 -4.5
1,382,940 - MMP_RS07200 0.55 -2.8
1,382,962 - MMP_RS07200 0.59 -4.0
1,382,963 + MMP_RS07200 0.59 -2.8
1,382,963 + MMP_RS07200 0.59 -3.7
1,382,963 + MMP_RS07200 0.59 -4.4
1,382,963 + MMP_RS07200 0.59 -3.1
1,382,964 - MMP_RS07200 0.59 -3.7
1,382,964 - MMP_RS07200 0.59 -3.6
1,382,964 - MMP_RS07200 0.59 -1.0
1,382,965 + MMP_RS07200 0.59 -3.8
1,382,965 + MMP_RS07200 0.59 -3.9
1,382,967 + MMP_RS07200 0.59 -3.1
1,383,031 - MMP_RS07200 0.69 -2.4
1,383,050 - MMP_RS07200 0.72 -2.9
1,383,085 + MMP_RS07200 0.78 -3.8
1,383,203 + -2.3
1,383,596 - -2.0
1,383,597 + -2.9

Or see this region's nucleotide sequence