Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07075

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07065 and MMP_RS07070 are separated by 48 nucleotidesMMP_RS07070 and MMP_RS07075 are separated by 286 nucleotidesMMP_RS07075 and MMP_RS07080 are separated by 62 nucleotides MMP_RS07065: MMP_RS07065 - translation elongation factor EF-1 subunit alpha, at 1,351,135 to 1,352,421 _RS07065 MMP_RS07070: MMP_RS07070 - 30S ribosomal protein S10, at 1,352,470 to 1,352,778 _RS07070 MMP_RS07075: MMP_RS07075 - phosphomannomutase/phosphoglucomutase, at 1,353,065 to 1,354,378 _RS07075 MMP_RS07080: MMP_RS07080 - formate--phosphoribosylaminoimidazolecarboxamide ligase, at 1,354,441 to 1,355,526 _RS07080 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1352.467 kb on + strandat 1352.564 kb on - strandat 1352.889 kb on + strandat 1352.965 kb on + strandat 1352.970 kb on + strandat 1352.974 kb on - strandat 1353.012 kb on - strandat 1353.016 kb on - strandat 1353.016 kb on - strandat 1353.017 kb on + strandat 1353.019 kb on - strandat 1353.021 kb on - strandat 1353.061 kb on - strandat 1353.081 kb on + strandat 1353.221 kb on + strand, within MMP_RS07075at 1353.580 kb on - strand, within MMP_RS07075at 1353.603 kb on - strand, within MMP_RS07075at 1353.707 kb on + strand, within MMP_RS07075at 1353.817 kb on + strand, within MMP_RS07075at 1353.886 kb on - strand, within MMP_RS07075at 1353.951 kb on + strand, within MMP_RS07075at 1353.951 kb on + strand, within MMP_RS07075at 1354.150 kb on + strand, within MMP_RS07075at 1354.273 kb on - strandat 1354.273 kb on - strandat 1354.357 kb on + strandat 1354.366 kb on + strandat 1354.369 kb on - strandat 1354.438 kb on + strandat 1354.447 kb on - strandat 1354.449 kb on - strandat 1354.450 kb on + strandat 1354.450 kb on + strandat 1354.604 kb on + strandat 1354.669 kb on - strandat 1354.693 kb on - strandat 1354.761 kb on - strandat 1354.769 kb on - strandat 1354.769 kb on - strandat 1354.770 kb on + strandat 1354.780 kb on - strandat 1354.780 kb on - strandat 1354.889 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,352,467 + -0.5
1,352,564 - -2.9
1,352,889 + +0.5
1,352,965 + +1.7
1,352,970 + -0.8
1,352,974 - +4.5
1,353,012 - -5.0
1,353,016 - -4.5
1,353,016 - -4.1
1,353,017 + -3.5
1,353,019 - -3.8
1,353,021 - -4.4
1,353,061 - -5.5
1,353,081 + -4.2
1,353,221 + MMP_RS07075 0.12 -5.0
1,353,580 - MMP_RS07075 0.39 -0.4
1,353,603 - MMP_RS07075 0.41 -1.6
1,353,707 + MMP_RS07075 0.49 -4.5
1,353,817 + MMP_RS07075 0.57 -4.4
1,353,886 - MMP_RS07075 0.62 -5.0
1,353,951 + MMP_RS07075 0.67 -0.4
1,353,951 + MMP_RS07075 0.67 -5.5
1,354,150 + MMP_RS07075 0.83 -4.0
1,354,273 - -0.4
1,354,273 - -2.5
1,354,357 + +1.6
1,354,366 + +0.7
1,354,369 - +0.7
1,354,438 + +1.3
1,354,447 - -2.9
1,354,449 - -3.4
1,354,450 + -3.4
1,354,450 + -2.9
1,354,604 + -2.4
1,354,669 - -3.0
1,354,693 - -3.4
1,354,761 - -2.6
1,354,769 - -1.5
1,354,769 - -3.5
1,354,770 + -2.7
1,354,780 - -3.2
1,354,780 - -2.8
1,354,889 - -4.3

Or see this region's nucleotide sequence