Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07065

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07060 and MMP_RS07065 are separated by 83 nucleotidesMMP_RS07065 and MMP_RS07070 are separated by 48 nucleotidesMMP_RS07070 and MMP_RS07075 are separated by 286 nucleotides MMP_RS07060: MMP_RS07060 - elongation factor EF-2, at 1,348,868 to 1,351,051 _RS07060 MMP_RS07065: MMP_RS07065 - translation elongation factor EF-1 subunit alpha, at 1,351,135 to 1,352,421 _RS07065 MMP_RS07070: MMP_RS07070 - 30S ribosomal protein S10, at 1,352,470 to 1,352,778 _RS07070 MMP_RS07075: MMP_RS07075 - phosphomannomutase/phosphoglucomutase, at 1,353,065 to 1,354,378 _RS07075 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1350.519 kb on - strandat 1351.013 kb on + strandat 1351.058 kb on + strandat 1351.815 kb on + strandat 1352.467 kb on + strandat 1352.564 kb on - strandat 1352.889 kb on + strandat 1352.965 kb on + strandat 1352.970 kb on + strandat 1352.974 kb on - strandat 1353.012 kb on - strandat 1353.016 kb on - strandat 1353.016 kb on - strandat 1353.017 kb on + strandat 1353.019 kb on - strandat 1353.021 kb on - strandat 1353.061 kb on - strandat 1353.081 kb on + strandat 1353.221 kb on + strand, within MMP_RS07075

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,350,519 - -3.1
1,351,013 + +0.0
1,351,058 + +1.8
1,351,815 + -1.7
1,352,467 + -0.5
1,352,564 - -2.9
1,352,889 + +0.5
1,352,965 + +1.7
1,352,970 + -0.8
1,352,974 - +4.5
1,353,012 - -5.0
1,353,016 - -4.5
1,353,016 - -4.1
1,353,017 + -3.5
1,353,019 - -3.8
1,353,021 - -4.4
1,353,061 - -5.5
1,353,081 + -4.2
1,353,221 + MMP_RS07075 0.12 -5.0

Or see this region's nucleotide sequence