Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06600

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS06590 and MMP_RS06595 are separated by 43 nucleotidesMMP_RS06595 and MMP_RS06600 are separated by 37 nucleotidesMMP_RS06600 and MMP_RS06605 are separated by 112 nucleotides MMP_RS06590: MMP_RS06590 - GNAT family N-acetyltransferase, at 1,264,147 to 1,264,653 _RS06590 MMP_RS06595: MMP_RS06595 - flagellar hook-basal body complex protein FliE, at 1,264,697 to 1,265,248 _RS06595 MMP_RS06600: MMP_RS06600 - class III signal peptide-containing protein, at 1,265,286 to 1,265,489 _RS06600 MMP_RS06605: MMP_RS06605 - DUF5814 domain-containing protein, at 1,265,602 to 1,268,037 _RS06605 Position (kb) 1265 1266Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1264.404 kb on - strand, within MMP_RS06590at 1264.417 kb on - strand, within MMP_RS06590at 1264.417 kb on - strand, within MMP_RS06590at 1264.591 kb on - strand, within MMP_RS06590at 1264.692 kb on + strandat 1264.703 kb on - strandat 1264.703 kb on - strandat 1265.287 kb on - strandat 1265.310 kb on - strand, within MMP_RS06600at 1265.311 kb on + strand, within MMP_RS06600at 1265.510 kb on - strandat 1265.511 kb on + strandat 1265.521 kb on - strandat 1265.526 kb on + strandat 1265.526 kb on + strandat 1265.544 kb on - strandat 1265.991 kb on + strand, within MMP_RS06605at 1266.009 kb on - strand, within MMP_RS06605at 1266.024 kb on - strand, within MMP_RS06605at 1266.025 kb on + strand, within MMP_RS06605at 1266.051 kb on + strand, within MMP_RS06605at 1266.374 kb on - strand, within MMP_RS06605

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
remove
1,264,404 - MMP_RS06590 0.51 +0.8
1,264,417 - MMP_RS06590 0.53 +0.6
1,264,417 - MMP_RS06590 0.53 +1.4
1,264,591 - MMP_RS06590 0.88 +1.0
1,264,692 + +0.2
1,264,703 - -1.1
1,264,703 - +0.4
1,265,287 - -5.0
1,265,310 - MMP_RS06600 0.12 -3.5
1,265,311 + MMP_RS06600 0.12 -3.2
1,265,510 - -5.9
1,265,511 + -2.9
1,265,521 - -5.0
1,265,526 + -2.0
1,265,526 + -3.5
1,265,544 - +0.1
1,265,991 + MMP_RS06605 0.16 +0.6
1,266,009 - MMP_RS06605 0.17 -2.8
1,266,024 - MMP_RS06605 0.17 +0.3
1,266,025 + MMP_RS06605 0.17 -1.9
1,266,051 + MMP_RS06605 0.18 -0.3
1,266,374 - MMP_RS06605 0.32 -1.5

Or see this region's nucleotide sequence