Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06345

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06335 and MMP_RS06340 are separated by 20 nucleotidesMMP_RS06340 and MMP_RS06345 are separated by 52 nucleotidesMMP_RS06345 and MMP_RS06350 are separated by 79 nucleotidesMMP_RS06350 and MMP_RS06355 overlap by 8 nucleotides MMP_RS06335: MMP_RS06335 - HAD family hydrolase, at 1,219,526 to 1,219,909 _RS06335 MMP_RS06340: MMP_RS06340 - phosphoadenosine phosphosulfate reductase family protein, at 1,219,930 to 1,220,820 _RS06340 MMP_RS06345: MMP_RS06345 - formate dehydrogenase accessory sulfurtransferase FdhD, at 1,220,873 to 1,221,574 _RS06345 MMP_RS06350: MMP_RS06350 - HesA/MoeB/ThiF family protein, at 1,221,654 to 1,222,373 _RS06350 MMP_RS06355: MMP_RS06355 - molybdenum cofactor biosynthesis protein MoaE, at 1,222,366 to 1,222,791 _RS06355 Position (kb) 1220 1221 1222Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1219.987 kb on - strandat 1220.075 kb on + strand, within MMP_RS06340at 1220.173 kb on - strand, within MMP_RS06340at 1220.211 kb on - strand, within MMP_RS06340at 1220.326 kb on + strand, within MMP_RS06340at 1220.352 kb on + strand, within MMP_RS06340at 1220.359 kb on - strand, within MMP_RS06340at 1220.404 kb on - strand, within MMP_RS06340at 1220.455 kb on + strand, within MMP_RS06340at 1220.460 kb on - strand, within MMP_RS06340at 1220.523 kb on - strand, within MMP_RS06340at 1220.524 kb on + strand, within MMP_RS06340at 1220.548 kb on + strand, within MMP_RS06340at 1220.714 kb on + strand, within MMP_RS06340at 1220.761 kb on - strandat 1220.822 kb on - strandat 1220.847 kb on + strandat 1220.857 kb on + strandat 1220.888 kb on - strandat 1220.898 kb on + strandat 1220.907 kb on - strandat 1220.914 kb on - strandat 1221.002 kb on + strand, within MMP_RS06345at 1221.004 kb on - strand, within MMP_RS06345at 1221.268 kb on - strand, within MMP_RS06345at 1221.333 kb on - strand, within MMP_RS06345at 1221.333 kb on - strand, within MMP_RS06345at 1221.333 kb on - strand, within MMP_RS06345at 1221.333 kb on - strand, within MMP_RS06345at 1221.333 kb on - strand, within MMP_RS06345at 1221.333 kb on - strand, within MMP_RS06345at 1221.334 kb on + strand, within MMP_RS06345at 1221.334 kb on + strand, within MMP_RS06345at 1221.334 kb on + strand, within MMP_RS06345at 1221.336 kb on + strand, within MMP_RS06345at 1221.351 kb on + strand, within MMP_RS06345at 1221.356 kb on + strand, within MMP_RS06345at 1221.384 kb on - strand, within MMP_RS06345at 1221.384 kb on - strand, within MMP_RS06345at 1221.543 kb on - strandat 1221.599 kb on + strandat 1221.610 kb on - strandat 1221.610 kb on - strandat 1221.611 kb on + strandat 1221.628 kb on + strandat 1221.630 kb on + strandat 1221.641 kb on - strandat 1221.641 kb on - strandat 1221.642 kb on + strandat 1221.642 kb on + strandat 1221.654 kb on + strandat 1221.654 kb on + strandat 1221.654 kb on + strandat 1221.781 kb on + strand, within MMP_RS06350at 1221.860 kb on + strand, within MMP_RS06350at 1221.927 kb on + strand, within MMP_RS06350at 1222.030 kb on + strand, within MMP_RS06350at 1222.041 kb on + strand, within MMP_RS06350at 1222.053 kb on + strand, within MMP_RS06350at 1222.156 kb on - strand, within MMP_RS06350

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,219,987 - -5.3
1,220,075 + MMP_RS06340 0.16 -3.7
1,220,173 - MMP_RS06340 0.27 -5.4
1,220,211 - MMP_RS06340 0.32 -4.9
1,220,326 + MMP_RS06340 0.44 -4.0
1,220,352 + MMP_RS06340 0.47 -1.2
1,220,359 - MMP_RS06340 0.48 -5.0
1,220,404 - MMP_RS06340 0.53 -2.3
1,220,455 + MMP_RS06340 0.59 -5.6
1,220,460 - MMP_RS06340 0.59 -5.0
1,220,523 - MMP_RS06340 0.67 -2.5
1,220,524 + MMP_RS06340 0.67 -4.9
1,220,548 + MMP_RS06340 0.69 -5.2
1,220,714 + MMP_RS06340 0.88 +0.1
1,220,761 - -5.5
1,220,822 - -4.7
1,220,847 + -3.9
1,220,857 + -2.4
1,220,888 - -0.7
1,220,898 + -3.3
1,220,907 - -5.9
1,220,914 - -3.4
1,221,002 + MMP_RS06345 0.18 -5.9
1,221,004 - MMP_RS06345 0.19 -5.2
1,221,268 - MMP_RS06345 0.56 -4.5
1,221,333 - MMP_RS06345 0.66 -5.7
1,221,333 - MMP_RS06345 0.66 -4.7
1,221,333 - MMP_RS06345 0.66 -6.1
1,221,333 - MMP_RS06345 0.66 -5.0
1,221,333 - MMP_RS06345 0.66 -5.6
1,221,333 - MMP_RS06345 0.66 -6.3
1,221,334 + MMP_RS06345 0.66 -5.8
1,221,334 + MMP_RS06345 0.66 -6.0
1,221,334 + MMP_RS06345 0.66 -5.5
1,221,336 + MMP_RS06345 0.66 -4.8
1,221,351 + MMP_RS06345 0.68 -7.1
1,221,356 + MMP_RS06345 0.69 -5.8
1,221,384 - MMP_RS06345 0.73 -5.3
1,221,384 - MMP_RS06345 0.73 -5.9
1,221,543 - -5.0
1,221,599 + -6.4
1,221,610 - +1.1
1,221,610 - -3.9
1,221,611 + -5.4
1,221,628 + -0.8
1,221,630 + +1.0
1,221,641 - -7.0
1,221,641 - -6.1
1,221,642 + +0.0
1,221,642 + +0.4
1,221,654 + -4.9
1,221,654 + -5.6
1,221,654 + -4.0
1,221,781 + MMP_RS06350 0.18 -6.2
1,221,860 + MMP_RS06350 0.29 -6.4
1,221,927 + MMP_RS06350 0.38 -3.8
1,222,030 + MMP_RS06350 0.52 -5.7
1,222,041 + MMP_RS06350 0.54 -4.8
1,222,053 + MMP_RS06350 0.55 -7.4
1,222,156 - MMP_RS06350 0.70 -5.2

Or see this region's nucleotide sequence