Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06315

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS06310 and MMP_RS06315 are separated by 112 nucleotidesMMP_RS06315 and MMP_RS06320 are separated by 22 nucleotidesMMP_RS06320 and MMP_RS06325 are separated by 94 nucleotides MMP_RS06310: MMP_RS06310 - NAD(P)/FAD-dependent oxidoreductase, at 1,215,346 to 1,216,503 _RS06310 MMP_RS06315: MMP_RS06315 - cobalt-precorrin-7 (C(5))-methyltransferase, at 1,216,616 to 1,217,242 _RS06315 MMP_RS06320: MMP_RS06320 - hypothetical protein, at 1,217,265 to 1,217,903 _RS06320 MMP_RS06325: MMP_RS06325 - hypothetical protein, at 1,217,998 to 1,218,300 _RS06325 Position (kb) 1216 1217 1218Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 1215.648 kb on + strand, within MMP_RS06310at 1215.664 kb on - strand, within MMP_RS06310at 1215.895 kb on + strand, within MMP_RS06310at 1215.928 kb on - strand, within MMP_RS06310at 1216.012 kb on + strand, within MMP_RS06310at 1216.100 kb on + strand, within MMP_RS06310at 1216.128 kb on - strand, within MMP_RS06310at 1216.129 kb on + strand, within MMP_RS06310at 1216.192 kb on + strand, within MMP_RS06310at 1216.506 kb on - strandat 1216.550 kb on - strandat 1216.550 kb on - strandat 1216.553 kb on + strandat 1216.555 kb on - strandat 1216.572 kb on - strandat 1216.573 kb on + strandat 1216.573 kb on + strandat 1216.998 kb on - strand, within MMP_RS06315at 1216.999 kb on + strand, within MMP_RS06315at 1217.233 kb on - strandat 1217.236 kb on + strandat 1217.386 kb on - strand, within MMP_RS06320at 1217.391 kb on + strand, within MMP_RS06320at 1217.396 kb on - strand, within MMP_RS06320at 1217.396 kb on - strand, within MMP_RS06320at 1217.397 kb on + strand, within MMP_RS06320at 1217.401 kb on - strand, within MMP_RS06320at 1217.472 kb on - strand, within MMP_RS06320at 1217.612 kb on - strand, within MMP_RS06320at 1217.826 kb on - strand, within MMP_RS06320at 1217.864 kb on - strandat 1217.901 kb on - strandat 1217.963 kb on - strandat 1217.966 kb on - strandat 1217.992 kb on - strandat 1217.993 kb on + strandat 1218.004 kb on + strandat 1218.005 kb on - strandat 1218.070 kb on + strand, within MMP_RS06325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
remove
1,215,648 + MMP_RS06310 0.26 -4.3
1,215,664 - MMP_RS06310 0.27 -5.0
1,215,895 + MMP_RS06310 0.47 -2.9
1,215,928 - MMP_RS06310 0.50 -5.1
1,216,012 + MMP_RS06310 0.58 -3.7
1,216,100 + MMP_RS06310 0.65 -3.0
1,216,128 - MMP_RS06310 0.68 -2.3
1,216,129 + MMP_RS06310 0.68 -3.3
1,216,192 + MMP_RS06310 0.73 +0.4
1,216,506 - -4.5
1,216,550 - -3.5
1,216,550 - -5.1
1,216,553 + -5.4
1,216,555 - -4.2
1,216,572 - -2.0
1,216,573 + -3.4
1,216,573 + -3.7
1,216,998 - MMP_RS06315 0.61 -2.9
1,216,999 + MMP_RS06315 0.61 -3.4
1,217,233 - -2.3
1,217,236 + -3.3
1,217,386 - MMP_RS06320 0.19 -0.8
1,217,391 + MMP_RS06320 0.20 +1.3
1,217,396 - MMP_RS06320 0.21 -0.1
1,217,396 - MMP_RS06320 0.21 -0.0
1,217,397 + MMP_RS06320 0.21 +0.3
1,217,401 - MMP_RS06320 0.21 -1.5
1,217,472 - MMP_RS06320 0.32 -6.5
1,217,612 - MMP_RS06320 0.54 +1.4
1,217,826 - MMP_RS06320 0.88 -2.0
1,217,864 - +0.4
1,217,901 - +3.3
1,217,963 - -1.2
1,217,966 - -2.0
1,217,992 - -3.0
1,217,993 + -1.3
1,218,004 + +1.0
1,218,005 - -5.5
1,218,070 + MMP_RS06325 0.24 +1.0

Or see this region's nucleotide sequence