Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06270

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS06260 and MMP_RS06265 are separated by 47 nucleotidesMMP_RS06265 and MMP_RS06270 are separated by 17 nucleotidesMMP_RS06270 and MMP_RS06275 are separated by 126 nucleotides MMP_RS06260: MMP_RS06260 - histidinol-phosphate transaminase, at 1,203,152 to 1,204,267 _RS06260 MMP_RS06265: MMP_RS06265 - DUF2100 domain-containing protein, at 1,204,315 to 1,204,974 _RS06265 MMP_RS06270: MMP_RS06270 - TIGR00300 family protein, at 1,204,992 to 1,206,239 _RS06270 MMP_RS06275: MMP_RS06275 - ATP-dependent DNA helicase, at 1,206,366 to 1,208,375 _RS06275 Position (kb) 1204 1205 1206 1207Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1204.595 kb on + strandat 1204.826 kb on + strandat 1204.974 kb on - strandat 1205.099 kb on - strandat 1205.118 kb on - strand, within MMP_RS06270at 1205.140 kb on + strand, within MMP_RS06270at 1205.144 kb on + strand, within MMP_RS06270at 1205.222 kb on - strand, within MMP_RS06270at 1205.250 kb on + strand, within MMP_RS06270at 1205.327 kb on - strand, within MMP_RS06270at 1205.342 kb on - strand, within MMP_RS06270at 1205.343 kb on + strand, within MMP_RS06270at 1205.343 kb on + strand, within MMP_RS06270at 1205.343 kb on + strand, within MMP_RS06270at 1205.542 kb on - strand, within MMP_RS06270at 1206.071 kb on - strand, within MMP_RS06270at 1206.123 kb on - strandat 1206.217 kb on + strandat 1206.283 kb on - strandat 1206.284 kb on + strandat 1206.290 kb on - strandat 1206.298 kb on - strandat 1206.301 kb on + strandat 1206.317 kb on + strandat 1206.317 kb on + strandat 1206.320 kb on + strandat 1206.321 kb on - strandat 1206.321 kb on - strandat 1206.321 kb on - strandat 1206.321 kb on - strandat 1206.321 kb on - strandat 1206.322 kb on + strandat 1206.322 kb on + strandat 1206.322 kb on + strandat 1206.322 kb on + strandat 1206.329 kb on - strandat 1206.330 kb on + strandat 1206.363 kb on + strandat 1206.431 kb on + strandat 1206.431 kb on + strandat 1206.431 kb on + strandat 1206.443 kb on - strandat 1206.733 kb on + strand, within MMP_RS06275at 1206.874 kb on - strand, within MMP_RS06275at 1206.876 kb on - strand, within MMP_RS06275at 1206.876 kb on - strand, within MMP_RS06275at 1206.877 kb on + strand, within MMP_RS06275at 1206.878 kb on - strand, within MMP_RS06275at 1207.044 kb on + strand, within MMP_RS06275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
remove
1,204,595 + -3.6
1,204,826 + -2.6
1,204,974 - -2.9
1,205,099 - -3.5
1,205,118 - MMP_RS06270 0.10 -2.3
1,205,140 + MMP_RS06270 0.12 -4.3
1,205,144 + MMP_RS06270 0.12 -3.9
1,205,222 - MMP_RS06270 0.18 -5.2
1,205,250 + MMP_RS06270 0.21 -3.9
1,205,327 - MMP_RS06270 0.27 -2.9
1,205,342 - MMP_RS06270 0.28 -4.9
1,205,343 + MMP_RS06270 0.28 -3.2
1,205,343 + MMP_RS06270 0.28 -3.7
1,205,343 + MMP_RS06270 0.28 -2.7
1,205,542 - MMP_RS06270 0.44 -4.4
1,206,071 - MMP_RS06270 0.86 -5.5
1,206,123 - -3.3
1,206,217 + -2.8
1,206,283 - -2.3
1,206,284 + -4.5
1,206,290 - -5.3
1,206,298 - -4.9
1,206,301 + -4.3
1,206,317 + +1.1
1,206,317 + +0.6
1,206,320 + +0.1
1,206,321 - -0.2
1,206,321 - -1.9
1,206,321 - +0.2
1,206,321 - +0.2
1,206,321 - +0.1
1,206,322 + +1.0
1,206,322 + +0.3
1,206,322 + +0.9
1,206,322 + -1.5
1,206,329 - +1.4
1,206,330 + -0.2
1,206,363 + +0.4
1,206,431 + -5.2
1,206,431 + -5.5
1,206,431 + -0.2
1,206,443 - +0.7
1,206,733 + MMP_RS06275 0.18 +2.3
1,206,874 - MMP_RS06275 0.25 +0.0
1,206,876 - MMP_RS06275 0.25 +0.3
1,206,876 - MMP_RS06275 0.25 +0.1
1,206,877 + MMP_RS06275 0.25 -1.2
1,206,878 - MMP_RS06275 0.25 +0.6
1,207,044 + MMP_RS06275 0.34 +0.7

Or see this region's nucleotide sequence