Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06120

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06110 and MMP_RS06115 are separated by 30 nucleotidesMMP_RS06115 and MMP_RS06120 are separated by 71 nucleotidesMMP_RS06120 and MMP_RS06125 are separated by 142 nucleotidesMMP_RS06125 and MMP_RS06130 are separated by 68 nucleotides MMP_RS06110: MMP_RS06110 - ATP-dependent protease LonB, at 1,168,587 to 1,170,665 _RS06110 MMP_RS06115: MMP_RS06115 - class II aldolase/adducin family protein, at 1,170,696 to 1,171,238 _RS06115 MMP_RS06120: MMP_RS06120 - UPF0147 family protein, at 1,171,310 to 1,171,585 _RS06120 MMP_RS06125: MMP_RS06125 - ribose-5-phosphate isomerase RpiA, at 1,171,728 to 1,172,447 _RS06125 MMP_RS06130: MMP_RS06130 - peptidylprolyl isomerase, at 1,172,516 to 1,172,968 _RS06130 Position (kb) 1171 1172Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1170.662 kb on + strandat 1170.669 kb on - strandat 1170.672 kb on - strandat 1170.713 kb on - strandat 1170.735 kb on - strandat 1170.773 kb on + strand, within MMP_RS06115at 1170.797 kb on + strand, within MMP_RS06115at 1170.798 kb on - strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.799 kb on + strand, within MMP_RS06115at 1170.800 kb on - strand, within MMP_RS06115at 1170.801 kb on + strand, within MMP_RS06115at 1170.801 kb on + strand, within MMP_RS06115at 1170.801 kb on + strand, within MMP_RS06115at 1170.803 kb on - strand, within MMP_RS06115at 1170.846 kb on + strand, within MMP_RS06115at 1170.846 kb on + strand, within MMP_RS06115at 1170.878 kb on + strand, within MMP_RS06115at 1170.878 kb on + strand, within MMP_RS06115at 1170.891 kb on + strand, within MMP_RS06115at 1170.950 kb on + strand, within MMP_RS06115at 1171.051 kb on + strand, within MMP_RS06115at 1171.051 kb on + strand, within MMP_RS06115at 1171.173 kb on - strand, within MMP_RS06115at 1171.174 kb on + strand, within MMP_RS06115at 1171.211 kb on + strandat 1171.215 kb on - strandat 1171.216 kb on + strandat 1171.220 kb on - strandat 1171.220 kb on - strandat 1171.221 kb on + strandat 1171.221 kb on + strandat 1171.232 kb on + strandat 1171.242 kb on + strandat 1171.255 kb on + strandat 1171.307 kb on - strandat 1171.337 kb on - strandat 1171.338 kb on + strand, within MMP_RS06120at 1171.338 kb on + strand, within MMP_RS06120at 1171.375 kb on - strand, within MMP_RS06120at 1171.541 kb on + strand, within MMP_RS06120at 1171.647 kb on - strandat 1171.654 kb on - strandat 1171.654 kb on - strandat 1171.685 kb on + strandat 1171.685 kb on + strandat 1171.710 kb on - strandat 1171.740 kb on - strandat 1171.867 kb on + strandat 1171.928 kb on - strandat 1171.993 kb on + strandat 1172.077 kb on - strandat 1172.083 kb on + strandat 1172.121 kb on - strandat 1172.164 kb on + strandat 1172.220 kb on + strandat 1172.249 kb on - strandat 1172.249 kb on - strandat 1172.250 kb on + strandat 1172.264 kb on - strandat 1172.265 kb on + strandat 1172.436 kb on + strandat 1172.495 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,170,662 + -0.2
1,170,669 - -0.5
1,170,672 - +2.7
1,170,713 - +0.9
1,170,735 - +0.9
1,170,773 + MMP_RS06115 0.14 +0.5
1,170,797 + MMP_RS06115 0.19 +1.4
1,170,798 - MMP_RS06115 0.19 +0.6
1,170,799 + MMP_RS06115 0.19 +0.3
1,170,799 + MMP_RS06115 0.19 -4.5
1,170,799 + MMP_RS06115 0.19 +0.1
1,170,799 + MMP_RS06115 0.19 +0.7
1,170,799 + MMP_RS06115 0.19 +1.2
1,170,799 + MMP_RS06115 0.19 +0.7
1,170,799 + MMP_RS06115 0.19 +1.3
1,170,800 - MMP_RS06115 0.19 +0.8
1,170,801 + MMP_RS06115 0.19 +0.4
1,170,801 + MMP_RS06115 0.19 +1.3
1,170,801 + MMP_RS06115 0.19 -1.5
1,170,803 - MMP_RS06115 0.20 +1.0
1,170,846 + MMP_RS06115 0.28 +0.9
1,170,846 + MMP_RS06115 0.28 +1.6
1,170,878 + MMP_RS06115 0.34 -0.5
1,170,878 + MMP_RS06115 0.34 +0.7
1,170,891 + MMP_RS06115 0.36 +0.6
1,170,950 + MMP_RS06115 0.47 +0.8
1,171,051 + MMP_RS06115 0.65 +1.3
1,171,051 + MMP_RS06115 0.65 +1.1
1,171,173 - MMP_RS06115 0.88 +1.0
1,171,174 + MMP_RS06115 0.88 +1.2
1,171,211 + +0.9
1,171,215 - +1.0
1,171,216 + -1.9
1,171,220 - -0.1
1,171,220 - +1.9
1,171,221 + +1.4
1,171,221 + -0.1
1,171,232 + +0.9
1,171,242 + +1.4
1,171,255 + +0.9
1,171,307 - +0.0
1,171,337 - -3.2
1,171,338 + MMP_RS06120 0.10 +0.2
1,171,338 + MMP_RS06120 0.10 -3.9
1,171,375 - MMP_RS06120 0.24 -4.1
1,171,541 + MMP_RS06120 0.84 -3.4
1,171,647 - -0.6
1,171,654 - -3.4
1,171,654 - -5.0
1,171,685 + +0.1
1,171,685 + +0.6
1,171,710 - +1.0
1,171,740 - -0.5
1,171,867 + -3.2
1,171,928 - -0.1
1,171,993 + -4.4
1,172,077 - -3.4
1,172,083 + -3.3
1,172,121 - -5.3
1,172,164 + -4.4
1,172,220 + -4.3
1,172,249 - -4.3
1,172,249 - -3.4
1,172,250 + -4.0
1,172,264 - -3.8
1,172,265 + -3.8
1,172,436 + -4.2
1,172,495 + -4.9

Or see this region's nucleotide sequence