Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05590

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
1,071,592	-				-3.4
1,071,599	-				-4.2
1,071,617	+				+0.3
1,071,617	+				+0.2
1,071,622	-				-0.0
1,071,626	-				-0.1
1,071,702	-				+0.0
1,071,755	+				+0.3
1,071,755	+				+0.1
1,071,768	-				+0.6
1,071,769	+				+0.0
1,071,769	+				-1.5
1,071,823	-				+2.3
1,071,824	+				+3.1
1,071,837	-				+0.9
1,071,838	+				-0.7
1,071,848	-				+1.0
1,071,848	-				+0.2
1,071,848	-				+0.2
1,071,849	+				-1.0
1,071,849	+				-1.3
1,071,851	-				+0.1
1,071,851	-				-0.8
1,071,851	-				+0.2
1,071,851	-				+0.2
1,071,853	-				+0.9
1,071,853	-				-0.2
1,071,853	-				+0.3
1,071,853	-				+2.3
1,071,854	+				-1.5
1,071,866	+				-0.9
1,071,926	-				-1.2
1,072,001	+				+0.0
1,072,002	-				+0.1
1,072,007	-				+1.4
1,072,041	+				-0.6
1,072,045	-				-0.5
1,072,063	-				+0.5
1,072,063	-				-1.7
1,072,070	+				-0.8
1,072,104	-				+0.2
1,072,104	-				+1.4
1,072,104	-				+0.7
1,072,105	+				-0.2
1,072,114	-				-0.4
1,072,114	-				+0.9
1,072,115	+				-1.4
1,072,115	+				-0.1
1,072,115	+				-4.3
1,072,115	+				-0.5
1,072,178	-				-5.4
1,072,184	+				-0.6
1,072,284	-				-0.9
1,072,285	+				+0.4
1,072,285	+				-1.6
1,072,285	+				-0.1
1,072,288	-				+0.6
1,072,288	-				-4.0
1,072,288	-				+1.0
1,072,289	+				+0.7
1,072,289	+				+0.2
1,072,300	-				-0.1
1,072,301	+				-0.2
1,072,304	-				-0.1
1,072,304	-				-0.6
1,072,305	+				+2.2
1,072,305	+				-1.5
1,072,305	+				+0.9
1,072,305	+				-0.8
1,072,305	+				+1.6
1,072,310	+				-1.1
1,072,310	+				-0.7
1,072,331	+				+0.0
1,072,334	-				+0.4
1,072,337	-				-1.7
1,072,359	-				-0.7
1,072,371	-				-0.4
1,072,429	-				-0.8
1,072,429	-				-2.1
1,072,430	+				+0.4
1,072,464	+		MMP_RS05590	0.11	-0.7
1,072,464	+		MMP_RS05590	0.11	-1.2
1,072,537	-		MMP_RS05590	0.18	+0.7
1,072,576	+		MMP_RS05590	0.21	+0.4
1,072,579	-		MMP_RS05590	0.21	+0.1
1,072,579	-		MMP_RS05590	0.21	+0.3
1,072,580	+		MMP_RS05590	0.21	-3.2
1,072,580	+		MMP_RS05590	0.21	+0.7
1,072,580	+		MMP_RS05590	0.21	-5.5
1,072,580	+		MMP_RS05590	0.21	-0.2
1,072,580	+		MMP_RS05590	0.21	-0.1
1,072,580	+		MMP_RS05590	0.21	+0.0
1,072,580	+		MMP_RS05590	0.21	-1.7
1,072,580	+		MMP_RS05590	0.21	+0.5
1,072,583	-		MMP_RS05590	0.22	-1.6
1,072,583	-		MMP_RS05590	0.22	-0.2
1,072,588	-		MMP_RS05590	0.22	-5.8
1,072,588	-		MMP_RS05590	0.22	+2.1
1,072,589	+		MMP_RS05590	0.22	-0.2
1,072,589	+		MMP_RS05590	0.22	-0.8
1,072,592	-		MMP_RS05590	0.22	-1.3
1,072,592	-		MMP_RS05590	0.22	+0.1
1,072,592	-		MMP_RS05590	0.22	+0.0
1,072,592	-		MMP_RS05590	0.22	-0.5
1,072,593	+		MMP_RS05590	0.23	+0.3
1,072,593	+		MMP_RS05590	0.23	-0.3
1,072,593	+		MMP_RS05590	0.23	+0.5
1,072,612	+		MMP_RS05590	0.24	+1.8
1,072,632	+		MMP_RS05590	0.26	-1.6
1,072,697	-		MMP_RS05590	0.32	-0.0
1,072,697	-		MMP_RS05590	0.32	-0.8
1,072,697	-		MMP_RS05590	0.32	+1.4
1,072,697	-		MMP_RS05590	0.32	+0.4
1,072,697	-		MMP_RS05590	0.32	+1.4
1,072,697	-		MMP_RS05590	0.32	-0.6
1,072,697	-		MMP_RS05590	0.32	+0.6
1,072,698	+		MMP_RS05590	0.32	-2.8
1,072,698	+		MMP_RS05590	0.32	-3.7
1,072,708	+		MMP_RS05590	0.33	+0.6
1,072,718	-		MMP_RS05590	0.34	-1.1
1,072,718	-		MMP_RS05590	0.34	+0.6
1,072,809	-		MMP_RS05590	0.42	+0.9
1,072,814	-		MMP_RS05590	0.42	+2.5
1,072,815	+		MMP_RS05590	0.42	-0.4
1,072,817	+		MMP_RS05590	0.43	-0.7
1,072,846	-		MMP_RS05590	0.45	-0.5
1,072,854	-		MMP_RS05590	0.46	-1.0
1,072,863	-		MMP_RS05590	0.47	-0.7
1,072,864	+		MMP_RS05590	0.47	-1.3
1,072,864	+		MMP_RS05590	0.47	-0.1
1,072,866	-		MMP_RS05590	0.47	-2.2
1,072,924	-		MMP_RS05590	0.52	-0.4
1,072,925	+		MMP_RS05590	0.52	+0.2
1,072,926	-		MMP_RS05590	0.52	-0.3
1,072,926	-		MMP_RS05590	0.52	-0.2
1,072,927	+		MMP_RS05590	0.53	-2.4
1,072,929	+		MMP_RS05590	0.53	-0.1
1,072,957	+		MMP_RS05590	0.55	-4.9
1,072,958	-		MMP_RS05590	0.55	-0.8
1,072,958	-		MMP_RS05590	0.55	-1.5
1,072,965	+		MMP_RS05590	0.56	-5.0
1,072,967	-		MMP_RS05590	0.56	+0.7
1,072,967	-		MMP_RS05590	0.56	-0.1
1,073,016	-		MMP_RS05590	0.61	+0.1
1,073,042	-		MMP_RS05590	0.63	-0.6
1,073,061	-		MMP_RS05590	0.65	-0.9
1,073,061	-		MMP_RS05590	0.65	+0.8
1,073,137	-		MMP_RS05590	0.71	-4.9
1,073,138	+		MMP_RS05590	0.72	-0.9
1,073,138	+		MMP_RS05590	0.72	-0.4
1,073,159	+		MMP_RS05590	0.73	-0.7
1,073,188	+		MMP_RS05590	0.76	-0.2
1,073,208	-		MMP_RS05590	0.78	+0.0
1,073,217	+		MMP_RS05590	0.79	+0.5
1,073,270	-		MMP_RS05590	0.83	-1.1
1,073,298	+		MMP_RS05590	0.86	-3.5
1,073,301	-		MMP_RS05590	0.86	+0.2
1,073,367	-				+0.4
1,073,378	+				-4.6
1,073,378	+				-1.2
1,073,378	+				-1.4
1,073,378	+				-1.7
1,073,442	+				+0.6
1,073,449	-				+0.0
1,073,450	+				-0.1
1,073,452	-				+1.3
1,073,452	-				+0.4
1,073,452	-				+0.8
1,073,453	+				-0.0
1,073,459	-				+0.5
1,073,465	-				+0.4
1,073,465	-				-0.3
1,073,466	+				-0.5
1,073,466	+				+0.1
1,073,466	+				+1.5
1,073,535	-		MMP_RS05595	0.13	+1.0
1,073,621	-		MMP_RS05595	0.27	+0.1
1,073,639	-		MMP_RS05595	0.30	-1.1
1,073,640	+		MMP_RS05595	0.30	-2.9
1,073,643	-		MMP_RS05595	0.31	+0.5
1,073,708	-		MMP_RS05595	0.42	-3.6
1,073,892	-		MMP_RS05595	0.72	+0.0
1,073,893	+		MMP_RS05595	0.72	-1.7
1,073,893	+		MMP_RS05595	0.72	+1.7
1,073,896	-		MMP_RS05595	0.72	-0.8
1,073,896	-		MMP_RS05595	0.72	-0.2
1,073,899	-		MMP_RS05595	0.73	-1.2
1,073,899	-		MMP_RS05595	0.73	+0.7
1,073,899	-		MMP_RS05595	0.73	+0.6
1,073,900	+		MMP_RS05595	0.73	+1.1
1,073,900	+		MMP_RS05595	0.73	-3.0
1,073,903	-		MMP_RS05595	0.74	+1.0
1,073,904	+		MMP_RS05595	0.74	+0.9
1,073,904	+		MMP_RS05595	0.74	-2.5
1,073,916	-		MMP_RS05595	0.76	-0.4
1,073,917	+		MMP_RS05595	0.76	+0.6
1,073,926	+		MMP_RS05595	0.77	+0.8
1,073,928	+		MMP_RS05595	0.78	+0.9
1,073,931	+		MMP_RS05595	0.78	+0.1
1,073,931	+		MMP_RS05595	0.78	+1.3
1,073,945	+		MMP_RS05595	0.80	+0.4
1,073,959	+		MMP_RS05595	0.83	+0.2
1,074,061	-				+0.3
1,074,061	-				+0.6
1,074,061	-				-1.3
1,074,062	+				+1.3
1,074,068	+				+0.6
1,074,072	-				+0.8
1,074,075	-				-0.5
1,074,076	+				+0.5
1,074,109	-				+1.0
1,074,109	-				+1.5
1,074,109	-				+1.1
1,074,110	+				-0.9
1,074,110	+				-0.4
1,074,110	+				+0.9
1,074,116	+				+1.6
1,074,116	+				-0.4
1,074,116	+				+0.3
1,074,117	-				+0.6
1,074,123	-				-0.5
1,074,124	+				+0.1
1,074,124	+				+1.7
1,074,128	-				-0.4
1,074,131	-				-0.7
1,074,141	+				-2.3
1,074,161	-				+1.8
1,074,161	-				-0.2
1,074,175	+				+0.6
1,074,193	-		MMP_RS05600	0.11	+1.1
1,074,193	-		MMP_RS05600	0.11	+1.2
1,074,194	+		MMP_RS05600	0.11	+0.4
1,074,194	+		MMP_RS05600	0.11	+1.1
1,074,194	+		MMP_RS05600	0.11	-0.4
1,074,194	+		MMP_RS05600	0.11	-3.3
1,074,194	+		MMP_RS05600	0.11	+0.7
1,074,194	+		MMP_RS05600	0.11	-1.1
1,074,197	-		MMP_RS05600	0.12	+0.7
1,074,197	-		MMP_RS05600	0.12	-0.3
1,074,198	+		MMP_RS05600	0.12	-0.4
1,074,258	-		MMP_RS05600	0.20	-0.5
1,074,267	-		MMP_RS05600	0.21	+0.2
1,074,268	+		MMP_RS05600	0.21	-0.2
1,074,365	-		MMP_RS05600	0.34	+1.1