Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05525

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05520 and MMP_RS05525 are separated by 131 nucleotidesMMP_RS05525 and MMP_RS05530 are separated by 43 nucleotides MMP_RS05520: MMP_RS05520 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 1,058,824 to 1,060,308 _RS05520 MMP_RS05525: MMP_RS05525 - calcium/sodium antiporter, at 1,060,440 to 1,061,396 _RS05525 MMP_RS05530: MMP_RS05530 - signal peptide peptidase SppA, at 1,061,440 to 1,062,366 _RS05530 Position (kb) 1060 1061 1062Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1059.543 kb on + strandat 1059.697 kb on + strandat 1059.697 kb on + strandat 1059.741 kb on - strandat 1059.749 kb on - strandat 1059.879 kb on - strandat 1059.886 kb on - strandat 1060.025 kb on - strandat 1060.090 kb on + strandat 1060.216 kb on + strandat 1060.322 kb on + strandat 1060.387 kb on + strandat 1060.388 kb on - strandat 1060.388 kb on - strandat 1060.388 kb on - strandat 1060.391 kb on + strandat 1060.455 kb on + strandat 1060.478 kb on + strandat 1060.479 kb on - strandat 1060.479 kb on - strandat 1060.479 kb on - strandat 1060.480 kb on + strandat 1060.480 kb on + strandat 1060.483 kb on + strandat 1060.585 kb on + strand, within MMP_RS05525at 1060.679 kb on - strand, within MMP_RS05525at 1060.862 kb on - strand, within MMP_RS05525at 1060.882 kb on + strand, within MMP_RS05525at 1060.972 kb on - strand, within MMP_RS05525at 1060.973 kb on + strand, within MMP_RS05525at 1060.973 kb on + strand, within MMP_RS05525at 1060.982 kb on + strand, within MMP_RS05525at 1061.071 kb on - strand, within MMP_RS05525at 1061.134 kb on + strand, within MMP_RS05525at 1061.277 kb on - strand, within MMP_RS05525at 1061.295 kb on + strand, within MMP_RS05525at 1061.388 kb on - strandat 1061.389 kb on + strandat 1061.526 kb on + strandat 1061.538 kb on - strand, within MMP_RS05530at 1061.538 kb on - strand, within MMP_RS05530at 1061.774 kb on - strand, within MMP_RS05530at 1061.852 kb on - strand, within MMP_RS05530at 1061.853 kb on + strand, within MMP_RS05530at 1061.877 kb on - strand, within MMP_RS05530at 1061.878 kb on + strand, within MMP_RS05530at 1061.878 kb on + strand, within MMP_RS05530at 1061.906 kb on - strand, within MMP_RS05530at 1061.910 kb on + strand, within MMP_RS05530at 1061.914 kb on - strand, within MMP_RS05530at 1061.918 kb on + strand, within MMP_RS05530at 1061.970 kb on - strand, within MMP_RS05530at 1062.027 kb on + strand, within MMP_RS05530at 1062.027 kb on + strand, within MMP_RS05530at 1062.113 kb on + strand, within MMP_RS05530at 1062.138 kb on - strand, within MMP_RS05530at 1062.182 kb on + strand, within MMP_RS05530at 1062.250 kb on + strand, within MMP_RS05530at 1062.252 kb on - strand, within MMP_RS05530at 1062.325 kb on - strandat 1062.350 kb on - strandat 1062.353 kb on - strandat 1062.353 kb on - strandat 1062.353 kb on - strandat 1062.355 kb on - strandat 1062.355 kb on - strandat 1062.355 kb on - strandat 1062.356 kb on + strandat 1062.369 kb on - strandat 1062.370 kb on + strandat 1062.370 kb on + strandat 1062.370 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,059,543 + -3.0
1,059,697 + -3.2
1,059,697 + -3.0
1,059,741 - -2.9
1,059,749 - -2.3
1,059,879 - -3.0
1,059,886 - -2.4
1,060,025 - -3.3
1,060,090 + -2.4
1,060,216 + -2.5
1,060,322 + -3.0
1,060,387 + -4.2
1,060,388 - -4.9
1,060,388 - -2.7
1,060,388 - -1.9
1,060,391 + -0.1
1,060,455 + +0.7
1,060,478 + -3.9
1,060,479 - -5.1
1,060,479 - -3.2
1,060,479 - -5.4
1,060,480 + -5.1
1,060,480 + -4.3
1,060,483 + -4.7
1,060,585 + MMP_RS05525 0.15 -4.9
1,060,679 - MMP_RS05525 0.25 -2.9
1,060,862 - MMP_RS05525 0.44 -4.7
1,060,882 + MMP_RS05525 0.46 -4.4
1,060,972 - MMP_RS05525 0.56 -4.6
1,060,973 + MMP_RS05525 0.56 -4.5
1,060,973 + MMP_RS05525 0.56 -4.2
1,060,982 + MMP_RS05525 0.57 -5.3
1,061,071 - MMP_RS05525 0.66 -3.7
1,061,134 + MMP_RS05525 0.73 -4.4
1,061,277 - MMP_RS05525 0.87 -3.8
1,061,295 + MMP_RS05525 0.89 -5.7
1,061,388 - -5.2
1,061,389 + -1.9
1,061,526 + -0.3
1,061,538 - MMP_RS05530 0.11 +0.1
1,061,538 - MMP_RS05530 0.11 +0.1
1,061,774 - MMP_RS05530 0.36 -1.2
1,061,852 - MMP_RS05530 0.44 -0.7
1,061,853 + MMP_RS05530 0.45 +1.6
1,061,877 - MMP_RS05530 0.47 -0.6
1,061,878 + MMP_RS05530 0.47 +0.2
1,061,878 + MMP_RS05530 0.47 -1.1
1,061,906 - MMP_RS05530 0.50 +1.0
1,061,910 + MMP_RS05530 0.51 +1.0
1,061,914 - MMP_RS05530 0.51 +3.4
1,061,918 + MMP_RS05530 0.52 +2.4
1,061,970 - MMP_RS05530 0.57 -0.3
1,062,027 + MMP_RS05530 0.63 +0.7
1,062,027 + MMP_RS05530 0.63 +0.8
1,062,113 + MMP_RS05530 0.73 +0.5
1,062,138 - MMP_RS05530 0.75 -0.8
1,062,182 + MMP_RS05530 0.80 +1.0
1,062,250 + MMP_RS05530 0.87 +1.2
1,062,252 - MMP_RS05530 0.88 -0.0
1,062,325 - +0.9
1,062,350 - +0.6
1,062,353 - -3.7
1,062,353 - -2.6
1,062,353 - +0.9
1,062,355 - +1.7
1,062,355 - -1.4
1,062,355 - +0.9
1,062,356 + +1.6
1,062,369 - +1.6
1,062,370 + +1.0
1,062,370 + -0.3
1,062,370 + -0.0

Or see this region's nucleotide sequence