Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05440

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05435 and MMP_RS05440 are separated by 333 nucleotidesMMP_RS05440 and MMP_RS05445 are separated by 47 nucleotidesMMP_RS05445 and MMP_RS05450 are separated by 35 nucleotides MMP_RS05435: MMP_RS05435 - 5'/3'-nucleotidase SurE, at 1,042,663 to 1,043,457 _RS05435 MMP_RS05440: MMP_RS05440 - winged helix-turn-helix transcriptional regulator, at 1,043,791 to 1,044,585 _RS05440 MMP_RS05445: MMP_RS05445 - CoB--CoM heterodisulfide reductase subunit B, at 1,044,633 to 1,045,514 _RS05445 MMP_RS05450: MMP_RS05450 - CoB--CoM heterodisulfide reductase subunit C, at 1,045,550 to 1,046,104 _RS05450 Position (kb) 1043 1044 1045Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1042.820 kb on - strand, within MMP_RS05435at 1042.940 kb on + strand, within MMP_RS05435at 1043.165 kb on + strand, within MMP_RS05435at 1043.209 kb on - strand, within MMP_RS05435at 1043.233 kb on + strand, within MMP_RS05435at 1043.311 kb on - strand, within MMP_RS05435at 1043.325 kb on - strand, within MMP_RS05435at 1043.383 kb on - strandat 1043.383 kb on - strandat 1043.384 kb on + strandat 1043.480 kb on + strandat 1043.502 kb on + strandat 1043.502 kb on + strandat 1043.503 kb on - strandat 1043.504 kb on + strandat 1043.504 kb on + strandat 1043.504 kb on + strandat 1043.508 kb on - strandat 1043.512 kb on - strandat 1043.539 kb on + strandat 1043.554 kb on + strandat 1043.558 kb on - strandat 1043.581 kb on + strandat 1043.589 kb on - strandat 1043.592 kb on + strandat 1043.592 kb on + strandat 1043.598 kb on + strandat 1043.628 kb on - strandat 1043.643 kb on + strandat 1043.643 kb on + strandat 1043.646 kb on - strandat 1043.646 kb on - strandat 1043.647 kb on + strandat 1043.650 kb on - strandat 1043.651 kb on + strandat 1043.661 kb on + strandat 1043.708 kb on - strandat 1043.727 kb on + strandat 1043.727 kb on + strandat 1043.730 kb on - strandat 1043.730 kb on - strandat 1043.730 kb on - strandat 1043.730 kb on - strandat 1043.730 kb on - strandat 1043.731 kb on + strandat 1043.731 kb on + strandat 1043.731 kb on + strandat 1043.731 kb on + strandat 1043.733 kb on + strandat 1043.745 kb on - strandat 1043.745 kb on - strandat 1043.746 kb on + strandat 1043.748 kb on + strandat 1043.808 kb on - strandat 1043.809 kb on + strandat 1043.853 kb on - strandat 1043.854 kb on + strandat 1043.857 kb on + strandat 1043.888 kb on - strand, within MMP_RS05440at 1043.888 kb on - strand, within MMP_RS05440at 1043.966 kb on + strand, within MMP_RS05440at 1044.121 kb on - strand, within MMP_RS05440at 1044.121 kb on - strand, within MMP_RS05440at 1044.122 kb on + strand, within MMP_RS05440at 1044.142 kb on - strand, within MMP_RS05440at 1044.142 kb on - strand, within MMP_RS05440at 1044.143 kb on + strand, within MMP_RS05440at 1044.143 kb on + strand, within MMP_RS05440at 1044.143 kb on + strand, within MMP_RS05440at 1044.143 kb on + strand, within MMP_RS05440at 1044.324 kb on + strand, within MMP_RS05440at 1044.537 kb on + strandat 1044.537 kb on + strandat 1044.548 kb on - strandat 1044.552 kb on + strandat 1044.552 kb on + strandat 1044.552 kb on + strandat 1044.588 kb on + strandat 1044.634 kb on - strandat 1044.654 kb on - strandat 1044.655 kb on + strandat 1044.671 kb on - strandat 1044.678 kb on - strandat 1044.742 kb on + strand, within MMP_RS05445at 1044.758 kb on + strand, within MMP_RS05445at 1044.768 kb on - strand, within MMP_RS05445at 1044.825 kb on - strand, within MMP_RS05445at 1044.825 kb on - strand, within MMP_RS05445at 1044.825 kb on - strand, within MMP_RS05445at 1044.826 kb on + strand, within MMP_RS05445at 1044.826 kb on + strand, within MMP_RS05445at 1044.888 kb on - strand, within MMP_RS05445at 1044.948 kb on + strand, within MMP_RS05445at 1044.955 kb on - strand, within MMP_RS05445at 1044.955 kb on - strand, within MMP_RS05445at 1045.136 kb on + strand, within MMP_RS05445at 1045.178 kb on + strand, within MMP_RS05445at 1045.321 kb on + strand, within MMP_RS05445at 1045.508 kb on + strandat 1045.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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1,042,820 - MMP_RS05435 0.20 +0.9
1,042,940 + MMP_RS05435 0.35 -1.0
1,043,165 + MMP_RS05435 0.63 +1.6
1,043,209 - MMP_RS05435 0.69 -1.7
1,043,233 + MMP_RS05435 0.72 -1.3
1,043,311 - MMP_RS05435 0.82 -0.8
1,043,325 - MMP_RS05435 0.83 +0.5
1,043,383 - +0.3
1,043,383 - -1.9
1,043,384 + -0.5
1,043,480 + -0.4
1,043,502 + +2.1
1,043,502 + -1.8
1,043,503 - +0.2
1,043,504 + -0.4
1,043,504 + +0.2
1,043,504 + -0.5
1,043,508 - +1.3
1,043,512 - +0.8
1,043,539 + -1.7
1,043,554 + -0.1
1,043,558 - +0.4
1,043,581 + +0.6
1,043,589 - -0.4
1,043,592 + -3.0
1,043,592 + -0.8
1,043,598 + +0.5
1,043,628 - +0.1
1,043,643 + -0.3
1,043,643 + -3.7
1,043,646 - -0.4
1,043,646 - +1.1
1,043,647 + +1.7
1,043,650 - +0.2
1,043,651 + +1.1
1,043,661 + +0.1
1,043,708 - -0.1
1,043,727 + +1.1
1,043,727 + +0.8
1,043,730 - -1.3
1,043,730 - -4.5
1,043,730 - -3.8
1,043,730 - -2.7
1,043,730 - -5.9
1,043,731 + -0.9
1,043,731 + -0.6
1,043,731 + +1.0
1,043,731 + +0.7
1,043,733 + -0.0
1,043,745 - -5.6
1,043,745 - -0.5
1,043,746 + -3.8
1,043,748 + +0.2
1,043,808 - +1.9
1,043,809 + -5.7
1,043,853 - -6.0
1,043,854 + -4.5
1,043,857 + -6.0
1,043,888 - MMP_RS05440 0.12 -5.2
1,043,888 - MMP_RS05440 0.12 -5.2
1,043,966 + MMP_RS05440 0.22 -2.3
1,044,121 - MMP_RS05440 0.42 -2.0
1,044,121 - MMP_RS05440 0.42 -5.7
1,044,122 + MMP_RS05440 0.42 -3.9
1,044,142 - MMP_RS05440 0.44 -4.4
1,044,142 - MMP_RS05440 0.44 -5.4
1,044,143 + MMP_RS05440 0.44 -3.3
1,044,143 + MMP_RS05440 0.44 -2.4
1,044,143 + MMP_RS05440 0.44 -5.5
1,044,143 + MMP_RS05440 0.44 -5.1
1,044,324 + MMP_RS05440 0.67 -5.5
1,044,537 + -5.7
1,044,537 + -5.2
1,044,548 - -4.4
1,044,552 + +1.3
1,044,552 + -5.6
1,044,552 + -4.0
1,044,588 + +0.5
1,044,634 - +1.4
1,044,654 - -0.2
1,044,655 + +0.9
1,044,671 - -0.5
1,044,678 - +2.1
1,044,742 + MMP_RS05445 0.12 -5.1
1,044,758 + MMP_RS05445 0.14 -5.1
1,044,768 - MMP_RS05445 0.15 -4.6
1,044,825 - MMP_RS05445 0.22 -5.4
1,044,825 - MMP_RS05445 0.22 -4.9
1,044,825 - MMP_RS05445 0.22 -5.4
1,044,826 + MMP_RS05445 0.22 -3.5
1,044,826 + MMP_RS05445 0.22 -3.5
1,044,888 - MMP_RS05445 0.29 -5.8
1,044,948 + MMP_RS05445 0.36 -2.4
1,044,955 - MMP_RS05445 0.37 -4.8
1,044,955 - MMP_RS05445 0.37 -6.0
1,045,136 + MMP_RS05445 0.57 -5.8
1,045,178 + MMP_RS05445 0.62 -2.9
1,045,321 + MMP_RS05445 0.78 -5.1
1,045,508 + -4.8
1,045,538 + -4.3

Or see this region's nucleotide sequence