Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04895

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04885 and MMP_RS04890 are separated by 13 nucleotidesMMP_RS04890 and MMP_RS04895 are separated by 22 nucleotidesMMP_RS04895 and MMP_RS04900 are separated by 88 nucleotides MMP_RS04885: MMP_RS04885 - sulfite exporter TauE/SafE family protein, at 929,000 to 929,812 _RS04885 MMP_RS04890: MMP_RS04890 - adenylyltransferase/cytidyltransferase family protein, at 929,826 to 930,278 _RS04890 MMP_RS04895: MMP_RS04895 - AI-2E family transporter, at 930,301 to 931,311 _RS04895 MMP_RS04900: MMP_RS04900 - hypothetical protein, at 931,400 to 933,241 _RS04900 Position (kb) 930 931 932Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 929.315 kb on + strand, within MMP_RS04885at 929.373 kb on + strand, within MMP_RS04885at 929.373 kb on + strand, within MMP_RS04885at 929.414 kb on + strand, within MMP_RS04885at 929.447 kb on - strand, within MMP_RS04885at 929.495 kb on - strand, within MMP_RS04885at 929.500 kb on + strand, within MMP_RS04885at 929.537 kb on + strand, within MMP_RS04885at 929.565 kb on - strand, within MMP_RS04885at 929.565 kb on - strand, within MMP_RS04885at 929.576 kb on - strand, within MMP_RS04885at 929.576 kb on - strand, within MMP_RS04885at 929.602 kb on + strand, within MMP_RS04885at 929.602 kb on + strand, within MMP_RS04885at 929.667 kb on - strand, within MMP_RS04885at 929.668 kb on + strand, within MMP_RS04885at 929.701 kb on + strand, within MMP_RS04885at 929.702 kb on - strand, within MMP_RS04885at 929.790 kb on + strandat 929.794 kb on + strandat 929.813 kb on + strandat 929.817 kb on + strandat 929.817 kb on + strandat 929.817 kb on + strandat 929.844 kb on + strandat 929.859 kb on + strandat 929.909 kb on + strand, within MMP_RS04890at 929.938 kb on + strand, within MMP_RS04890at 930.234 kb on - strandat 930.291 kb on - strandat 930.298 kb on - strandat 930.313 kb on - strandat 930.313 kb on - strandat 930.315 kb on - strandat 930.316 kb on + strandat 930.316 kb on + strandat 930.316 kb on + strandat 930.321 kb on - strandat 930.321 kb on - strandat 930.466 kb on - strand, within MMP_RS04895at 930.532 kb on - strand, within MMP_RS04895at 930.566 kb on - strand, within MMP_RS04895at 930.566 kb on - strand, within MMP_RS04895at 930.567 kb on + strand, within MMP_RS04895at 930.567 kb on + strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.586 kb on + strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.617 kb on + strand, within MMP_RS04895at 930.648 kb on - strand, within MMP_RS04895at 930.694 kb on - strand, within MMP_RS04895at 930.705 kb on - strand, within MMP_RS04895at 930.724 kb on - strand, within MMP_RS04895at 930.725 kb on + strand, within MMP_RS04895at 930.725 kb on + strand, within MMP_RS04895at 930.743 kb on - strand, within MMP_RS04895at 930.744 kb on + strand, within MMP_RS04895at 930.744 kb on + strand, within MMP_RS04895at 930.766 kb on + strand, within MMP_RS04895at 930.788 kb on - strand, within MMP_RS04895at 930.848 kb on - strand, within MMP_RS04895at 930.848 kb on - strand, within MMP_RS04895at 930.851 kb on - strand, within MMP_RS04895at 930.851 kb on - strand, within MMP_RS04895at 930.852 kb on + strand, within MMP_RS04895at 930.852 kb on + strand, within MMP_RS04895at 930.882 kb on - strand, within MMP_RS04895at 930.921 kb on - strand, within MMP_RS04895at 930.970 kb on - strand, within MMP_RS04895at 931.000 kb on - strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.002 kb on - strand, within MMP_RS04895at 931.004 kb on - strand, within MMP_RS04895at 931.005 kb on + strand, within MMP_RS04895at 931.005 kb on + strand, within MMP_RS04895at 931.019 kb on + strand, within MMP_RS04895at 931.057 kb on - strand, within MMP_RS04895at 931.084 kb on - strand, within MMP_RS04895at 931.099 kb on - strand, within MMP_RS04895at 931.125 kb on - strand, within MMP_RS04895at 931.133 kb on + strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.218 kb on - strandat 931.218 kb on - strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.221 kb on - strandat 931.221 kb on - strandat 931.222 kb on + strandat 931.242 kb on - strandat 931.249 kb on + strandat 931.249 kb on + strandat 931.285 kb on - strandat 931.293 kb on - strandat 931.294 kb on + strandat 931.333 kb on - strandat 931.343 kb on - strandat 931.344 kb on + strandat 931.344 kb on + strandat 931.345 kb on - strandat 931.346 kb on + strandat 931.351 kb on - strandat 931.352 kb on + strandat 931.362 kb on - strandat 931.362 kb on - strandat 931.363 kb on + strandat 931.363 kb on + strandat 931.368 kb on - strandat 931.368 kb on - strandat 931.372 kb on - strandat 931.372 kb on - strandat 931.373 kb on + strandat 931.373 kb on + strandat 931.397 kb on - strandat 931.398 kb on + strandat 931.398 kb on + strandat 931.398 kb on + strandat 931.398 kb on + strandat 931.398 kb on + strandat 931.399 kb on - strandat 931.400 kb on + strandat 931.400 kb on + strandat 931.400 kb on + strandat 931.400 kb on + strandat 931.400 kb on + strandat 931.478 kb on + strandat 931.478 kb on + strandat 931.594 kb on - strand, within MMP_RS04900at 931.648 kb on - strand, within MMP_RS04900at 931.649 kb on + strand, within MMP_RS04900at 931.649 kb on + strand, within MMP_RS04900at 931.717 kb on + strand, within MMP_RS04900at 931.963 kb on + strand, within MMP_RS04900at 931.963 kb on + strand, within MMP_RS04900at 932.048 kb on - strand, within MMP_RS04900at 932.048 kb on - strand, within MMP_RS04900at 932.048 kb on - strand, within MMP_RS04900at 932.049 kb on + strand, within MMP_RS04900at 932.049 kb on + strand, within MMP_RS04900at 932.049 kb on + strand, within MMP_RS04900at 932.061 kb on + strand, within MMP_RS04900at 932.061 kb on + strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.062 kb on - strand, within MMP_RS04900at 932.063 kb on + strand, within MMP_RS04900at 932.063 kb on + strand, within MMP_RS04900at 932.063 kb on + strand, within MMP_RS04900at 932.063 kb on + strand, within MMP_RS04900at 932.083 kb on - strand, within MMP_RS04900at 932.083 kb on - strand, within MMP_RS04900at 932.083 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.095 kb on - strand, within MMP_RS04900at 932.096 kb on + strand, within MMP_RS04900at 932.096 kb on + strand, within MMP_RS04900at 932.099 kb on - strand, within MMP_RS04900at 932.100 kb on + strand, within MMP_RS04900at 932.137 kb on - strand, within MMP_RS04900at 932.150 kb on + strand, within MMP_RS04900at 932.237 kb on - strand, within MMP_RS04900at 932.276 kb on + strand, within MMP_RS04900at 932.287 kb on - strand, within MMP_RS04900at 932.287 kb on - strand, within MMP_RS04900

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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929,315 + MMP_RS04885 0.39 -2.3
929,373 + MMP_RS04885 0.46 -3.0
929,373 + MMP_RS04885 0.46 -0.2
929,414 + MMP_RS04885 0.51 -0.6
929,447 - MMP_RS04885 0.55 +0.8
929,495 - MMP_RS04885 0.61 -1.5
929,500 + MMP_RS04885 0.62 -0.6
929,537 + MMP_RS04885 0.66 -0.0
929,565 - MMP_RS04885 0.69 -0.0
929,565 - MMP_RS04885 0.69 -1.8
929,576 - MMP_RS04885 0.71 -0.2
929,576 - MMP_RS04885 0.71 -0.3
929,602 + MMP_RS04885 0.74 +0.1
929,602 + MMP_RS04885 0.74 -0.9
929,667 - MMP_RS04885 0.82 -2.6
929,668 + MMP_RS04885 0.82 -0.6
929,701 + MMP_RS04885 0.86 -1.3
929,702 - MMP_RS04885 0.86 -0.2
929,790 + -1.9
929,794 + -3.4
929,813 + +0.1
929,817 + +0.4
929,817 + +0.8
929,817 + -1.8
929,844 + -6.3
929,859 + -5.8
929,909 + MMP_RS04890 0.18 -2.0
929,938 + MMP_RS04890 0.25 -3.3
930,234 - -3.1
930,291 - -6.1
930,298 - -5.9
930,313 - -3.8
930,313 - -5.8
930,315 - -2.9
930,316 + -4.1
930,316 + -5.3
930,316 + -4.0
930,321 - -1.3
930,321 - +1.0
930,466 - MMP_RS04895 0.16 +0.6
930,532 - MMP_RS04895 0.23 -3.1
930,566 - MMP_RS04895 0.26 -1.5
930,566 - MMP_RS04895 0.26 -1.6
930,567 + MMP_RS04895 0.26 -4.3
930,567 + MMP_RS04895 0.26 -5.5
930,585 - MMP_RS04895 0.28 -4.0
930,585 - MMP_RS04895 0.28 -2.0
930,585 - MMP_RS04895 0.28 -1.4
930,586 + MMP_RS04895 0.28 -1.6
930,587 - MMP_RS04895 0.28 -1.3
930,587 - MMP_RS04895 0.28 -2.0
930,587 - MMP_RS04895 0.28 -5.4
930,587 - MMP_RS04895 0.28 -4.2
930,587 - MMP_RS04895 0.28 -4.6
930,588 + MMP_RS04895 0.28 -0.7
930,588 + MMP_RS04895 0.28 -1.9
930,588 + MMP_RS04895 0.28 -5.2
930,588 + MMP_RS04895 0.28 -1.7
930,588 + MMP_RS04895 0.28 -1.7
930,588 + MMP_RS04895 0.28 -2.3
930,590 + MMP_RS04895 0.29 -1.2
930,590 + MMP_RS04895 0.29 -2.0
930,590 + MMP_RS04895 0.29 -2.6
930,617 + MMP_RS04895 0.31 -1.3
930,648 - MMP_RS04895 0.34 -1.3
930,694 - MMP_RS04895 0.39 -6.4
930,705 - MMP_RS04895 0.40 -0.8
930,724 - MMP_RS04895 0.42 -0.5
930,725 + MMP_RS04895 0.42 -4.2
930,725 + MMP_RS04895 0.42 -4.6
930,743 - MMP_RS04895 0.44 +0.1
930,744 + MMP_RS04895 0.44 -5.9
930,744 + MMP_RS04895 0.44 -5.4
930,766 + MMP_RS04895 0.46 -3.0
930,788 - MMP_RS04895 0.48 -6.3
930,848 - MMP_RS04895 0.54 -1.8
930,848 - MMP_RS04895 0.54 -6.0
930,851 - MMP_RS04895 0.54 -2.0
930,851 - MMP_RS04895 0.54 -1.9
930,852 + MMP_RS04895 0.55 -1.3
930,852 + MMP_RS04895 0.55 -2.8
930,882 - MMP_RS04895 0.57 -3.2
930,921 - MMP_RS04895 0.61 -0.5
930,970 - MMP_RS04895 0.66 -0.9
931,000 - MMP_RS04895 0.69 -3.0
931,001 + MMP_RS04895 0.69 -2.6
931,001 + MMP_RS04895 0.69 -5.5
931,001 + MMP_RS04895 0.69 +0.0
931,001 + MMP_RS04895 0.69 -1.0
931,001 + MMP_RS04895 0.69 -4.4
931,002 - MMP_RS04895 0.69 -2.2
931,004 - MMP_RS04895 0.70 -0.5
931,005 + MMP_RS04895 0.70 -4.2
931,005 + MMP_RS04895 0.70 -0.2
931,019 + MMP_RS04895 0.71 -2.3
931,057 - MMP_RS04895 0.75 -0.7
931,084 - MMP_RS04895 0.77 -1.1
931,099 - MMP_RS04895 0.79 -2.9
931,125 - MMP_RS04895 0.82 -2.9
931,133 + MMP_RS04895 0.82 -2.0
931,191 - MMP_RS04895 0.88 -3.1
931,191 - MMP_RS04895 0.88 -1.3
931,191 - MMP_RS04895 0.88 -3.2
931,191 - MMP_RS04895 0.88 -1.4
931,191 - MMP_RS04895 0.88 -2.9
931,192 + MMP_RS04895 0.88 -4.9
931,192 + MMP_RS04895 0.88 -2.6
931,192 + MMP_RS04895 0.88 -1.1
931,193 - MMP_RS04895 0.88 -0.6
931,193 - MMP_RS04895 0.88 -1.0
931,193 - MMP_RS04895 0.88 -1.8
931,194 + MMP_RS04895 0.88 +0.2
931,194 + MMP_RS04895 0.88 -2.5
931,194 + MMP_RS04895 0.88 -2.4
931,194 + MMP_RS04895 0.88 -0.4
931,218 - -3.5
931,218 - -4.0
931,219 + -3.0
931,219 + -5.9
931,219 + -5.2
931,219 + -2.0
931,221 - -0.6
931,221 - +0.5
931,222 + -0.7
931,242 - -2.4
931,249 + -1.5
931,249 + -1.2
931,285 - -5.6
931,293 - -5.9
931,294 + -2.4
931,333 - -1.7
931,343 - -0.4
931,344 + -5.9
931,344 + -3.0
931,345 - -0.1
931,346 + -1.5
931,351 - -4.2
931,352 + -0.7
931,362 - -4.7
931,362 - -1.6
931,363 + -0.9
931,363 + -2.5
931,368 - -5.3
931,368 - -0.0
931,372 - -2.0
931,372 - -0.3
931,373 + -3.4
931,373 + -6.2
931,397 - -1.4
931,398 + -1.3
931,398 + -1.3
931,398 + -0.5
931,398 + +0.4
931,398 + -6.4
931,399 - -0.3
931,400 + -5.5
931,400 + -2.8
931,400 + -1.1
931,400 + -1.8
931,400 + -1.2
931,478 + +0.3
931,478 + +1.2
931,594 - MMP_RS04900 0.11 -0.0
931,648 - MMP_RS04900 0.13 +0.8
931,649 + MMP_RS04900 0.14 +0.1
931,649 + MMP_RS04900 0.14 +0.0
931,717 + MMP_RS04900 0.17 -0.6
931,963 + MMP_RS04900 0.31 -1.1
931,963 + MMP_RS04900 0.31 +0.1
932,048 - MMP_RS04900 0.35 -0.3
932,048 - MMP_RS04900 0.35 -0.8
932,048 - MMP_RS04900 0.35 -0.9
932,049 + MMP_RS04900 0.35 -0.5
932,049 + MMP_RS04900 0.35 +0.1
932,049 + MMP_RS04900 0.35 +0.1
932,061 + MMP_RS04900 0.36 +0.7
932,061 + MMP_RS04900 0.36 +0.1
932,062 - MMP_RS04900 0.36 -0.8
932,062 - MMP_RS04900 0.36 -1.8
932,062 - MMP_RS04900 0.36 -2.2
932,062 - MMP_RS04900 0.36 -1.8
932,062 - MMP_RS04900 0.36 -1.4
932,063 + MMP_RS04900 0.36 +0.5
932,063 + MMP_RS04900 0.36 +0.0
932,063 + MMP_RS04900 0.36 +0.8
932,063 + MMP_RS04900 0.36 -0.1
932,083 - MMP_RS04900 0.37 +1.1
932,083 - MMP_RS04900 0.37 +0.1
932,083 - MMP_RS04900 0.37 +0.1
932,095 - MMP_RS04900 0.38 -0.2
932,095 - MMP_RS04900 0.38 +1.0
932,095 - MMP_RS04900 0.38 +1.6
932,095 - MMP_RS04900 0.38 +0.1
932,095 - MMP_RS04900 0.38 -0.2
932,096 + MMP_RS04900 0.38 +0.7
932,096 + MMP_RS04900 0.38 -0.8
932,099 - MMP_RS04900 0.38 -0.5
932,100 + MMP_RS04900 0.38 -0.3
932,137 - MMP_RS04900 0.40 -0.9
932,150 + MMP_RS04900 0.41 +0.5
932,237 - MMP_RS04900 0.45 +0.1
932,276 + MMP_RS04900 0.48 -0.5
932,287 - MMP_RS04900 0.48 +0.0
932,287 - MMP_RS04900 0.48 -5.5

Or see this region's nucleotide sequence