Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04875

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04865 and MMP_RS04870 are separated by 15 nucleotidesMMP_RS04870 and MMP_RS04875 are separated by 22 nucleotidesMMP_RS04875 and MMP_RS04880 are separated by 64 nucleotides MMP_RS04865: MMP_RS04865 - adenosylcobinamide-GDP ribazoletransferase, at 925,590 to 926,363 _RS04865 MMP_RS04870: MMP_RS04870 - TIGR02253 family HAD-type hydrolase, at 926,379 to 927,056 _RS04870 MMP_RS04875: MMP_RS04875 - energy-converting hydrogenase B subunit P, at 927,079 to 927,366 _RS04875 MMP_RS04880: MMP_RS04880 - phosphoadenosine phosphosulfate reductase family protein, at 927,431 to 928,942 _RS04880 Position (kb) 927 928Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 926.088 kb on - strandat 926.145 kb on + strandat 926.145 kb on + strandat 926.147 kb on + strandat 926.148 kb on - strandat 926.213 kb on - strandat 926.359 kb on + strandat 926.384 kb on - strandat 926.385 kb on + strandat 926.393 kb on - strandat 926.417 kb on - strandat 926.431 kb on - strandat 926.432 kb on + strandat 926.440 kb on + strandat 926.440 kb on + strandat 926.440 kb on + strandat 926.517 kb on + strand, within MMP_RS04870at 926.568 kb on + strand, within MMP_RS04870at 926.589 kb on + strand, within MMP_RS04870at 926.620 kb on - strand, within MMP_RS04870at 926.621 kb on + strand, within MMP_RS04870at 926.635 kb on + strand, within MMP_RS04870at 926.636 kb on - strand, within MMP_RS04870at 926.637 kb on + strand, within MMP_RS04870at 926.808 kb on + strand, within MMP_RS04870at 926.912 kb on - strand, within MMP_RS04870at 927.073 kb on - strandat 927.073 kb on - strandat 927.073 kb on - strandat 927.074 kb on + strandat 927.076 kb on + strandat 927.083 kb on + strandat 927.118 kb on + strand, within MMP_RS04875at 927.158 kb on + strand, within MMP_RS04875at 927.294 kb on + strand, within MMP_RS04875at 927.313 kb on - strand, within MMP_RS04875at 927.314 kb on + strand, within MMP_RS04875at 927.317 kb on - strand, within MMP_RS04875at 927.318 kb on + strand, within MMP_RS04875at 927.318 kb on + strand, within MMP_RS04875at 927.352 kb on - strandat 927.353 kb on + strandat 927.367 kb on - strandat 927.367 kb on - strandat 927.368 kb on + strandat 927.368 kb on + strandat 927.368 kb on + strandat 927.369 kb on - strandat 927.369 kb on - strandat 927.369 kb on - strandat 927.370 kb on + strandat 927.370 kb on + strandat 927.370 kb on + strandat 927.386 kb on - strandat 927.392 kb on - strandat 927.393 kb on + strandat 927.397 kb on - strandat 927.398 kb on + strandat 927.398 kb on + strandat 927.398 kb on + strandat 927.411 kb on - strandat 927.411 kb on - strandat 927.411 kb on - strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.413 kb on - strandat 927.413 kb on - strandat 927.413 kb on - strandat 927.414 kb on + strandat 927.414 kb on + strandat 927.414 kb on + strandat 927.414 kb on + strandat 927.425 kb on - strandat 927.606 kb on + strand, within MMP_RS04880at 927.675 kb on + strand, within MMP_RS04880at 927.678 kb on + strand, within MMP_RS04880at 927.695 kb on + strand, within MMP_RS04880at 927.895 kb on - strand, within MMP_RS04880at 927.899 kb on - strand, within MMP_RS04880at 927.996 kb on - strand, within MMP_RS04880at 927.996 kb on - strand, within MMP_RS04880at 928.000 kb on - strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.112 kb on - strand, within MMP_RS04880

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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926,088 - -3.6
926,145 + -4.9
926,145 + -2.4
926,147 + -3.8
926,148 - -3.1
926,213 - -3.9
926,359 + -3.2
926,384 - -5.0
926,385 + -2.9
926,393 - -2.5
926,417 - -5.8
926,431 - -6.7
926,432 + -5.8
926,440 + -4.6
926,440 + -4.3
926,440 + -4.2
926,517 + MMP_RS04870 0.20 -4.3
926,568 + MMP_RS04870 0.28 -4.4
926,589 + MMP_RS04870 0.31 -4.2
926,620 - MMP_RS04870 0.36 -4.6
926,621 + MMP_RS04870 0.36 -3.7
926,635 + MMP_RS04870 0.38 -4.7
926,636 - MMP_RS04870 0.38 -5.2
926,637 + MMP_RS04870 0.38 -4.2
926,808 + MMP_RS04870 0.63 -4.4
926,912 - MMP_RS04870 0.79 -0.0
927,073 - -2.7
927,073 - -5.8
927,073 - -5.1
927,074 + -3.7
927,076 + -5.6
927,083 + -2.7
927,118 + MMP_RS04875 0.14 -4.8
927,158 + MMP_RS04875 0.27 -4.6
927,294 + MMP_RS04875 0.75 -3.0
927,313 - MMP_RS04875 0.81 -6.0
927,314 + MMP_RS04875 0.82 -3.9
927,317 - MMP_RS04875 0.83 -4.9
927,318 + MMP_RS04875 0.83 -5.1
927,318 + MMP_RS04875 0.83 -3.0
927,352 - -5.0
927,353 + -4.1
927,367 - -1.0
927,367 - -4.4
927,368 + -4.1
927,368 + -6.5
927,368 + -3.3
927,369 - -4.9
927,369 - -4.6
927,369 - -3.7
927,370 + -4.3
927,370 + -4.3
927,370 + -3.7
927,386 - -3.4
927,392 - -3.9
927,393 + -4.3
927,397 - -4.3
927,398 + -4.2
927,398 + -4.2
927,398 + -4.4
927,411 - +1.6
927,411 - +0.5
927,411 - -1.3
927,412 + -1.7
927,412 + +1.0
927,412 + +2.8
927,412 + -1.4
927,412 + +1.4
927,412 + +0.1
927,413 - +0.4
927,413 - -3.7
927,413 - +0.2
927,414 + +1.4
927,414 + +0.8
927,414 + +0.7
927,414 + +2.1
927,425 - -0.5
927,606 + MMP_RS04880 0.12 +0.7
927,675 + MMP_RS04880 0.16 -0.5
927,678 + MMP_RS04880 0.16 -1.6
927,695 + MMP_RS04880 0.17 +1.2
927,895 - MMP_RS04880 0.31 +0.8
927,899 - MMP_RS04880 0.31 +0.7
927,996 - MMP_RS04880 0.37 +0.5
927,996 - MMP_RS04880 0.37 +1.3
928,000 - MMP_RS04880 0.38 -1.7
928,001 + MMP_RS04880 0.38 -0.8
928,001 + MMP_RS04880 0.38 +2.2
928,001 + MMP_RS04880 0.38 +0.7
928,001 + MMP_RS04880 0.38 +0.3
928,001 + MMP_RS04880 0.38 +0.4
928,112 - MMP_RS04880 0.45 +0.7

Or see this region's nucleotide sequence