Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04765 and MMP_RS04770 are separated by 97 nucleotides MMP_RS04770 and MMP_RS04775 are separated by 31 nucleotides MMP_RS04775 and MMP_RS04780 are separated by 165 nucleotides MMP_RS04780 and MMP_RS04785 are separated by 113 nucleotides
MMP_RS04765: MMP_RS04765 - asparagine synthase (glutamine-hydrolyzing), at 906,776 to 908,317
_RS04765
MMP_RS04770: MMP_RS04770 - dihydroorotate dehydrogenase electron transfer subunit, at 908,415 to 909,182
_RS04770
MMP_RS04775: MMP_RS04775 - adenosylhomocysteinase, at 909,214 to 910,461
_RS04775
MMP_RS04780: MMP_RS04780 - ribonuclease P, at 910,627 to 910,959
_RS04780
MMP_RS04785: MMP_RS04785 - hypothetical protein, at 911,073 to 911,723
_RS04785
Position (kb)
909
910
911 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 908.231 kb on - strand at 908.231 kb on - strand at 908.232 kb on + strand at 908.294 kb on - strand at 908.322 kb on + strand at 908.362 kb on - strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.376 kb on + strand at 908.377 kb on - strand at 908.377 kb on - strand at 908.377 kb on - strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.378 kb on + strand at 908.381 kb on - strand at 908.381 kb on - strand at 908.382 kb on + strand at 908.418 kb on - strand at 908.418 kb on - strand at 908.463 kb on - strand at 908.570 kb on + strand at 908.654 kb on - strand at 908.658 kb on - strand at 908.659 kb on + strand at 908.864 kb on - strand at 909.183 kb on + strand at 909.185 kb on - strand at 909.243 kb on + strand at 909.388 kb on - strand, within MMP_RS04775 at 909.388 kb on - strand, within MMP_RS04775 at 909.389 kb on + strand, within MMP_RS04775 at 909.598 kb on - strand, within MMP_RS04775 at 909.868 kb on + strand, within MMP_RS04775 at 909.874 kb on - strand, within MMP_RS04775 at 909.933 kb on - strand at 910.015 kb on + strand, within MMP_RS04775 at 910.015 kb on + strand, within MMP_RS04775 at 910.239 kb on - strand, within MMP_RS04775 at 910.393 kb on + strand at 910.393 kb on + strand at 910.393 kb on + strand at 910.455 kb on - strand at 910.472 kb on - strand at 910.473 kb on + strand at 910.473 kb on + strand at 910.473 kb on + strand at 910.477 kb on + strand at 910.478 kb on - strand at 910.524 kb on - strand at 910.525 kb on + strand at 910.529 kb on - strand at 910.531 kb on - strand at 910.531 kb on - strand at 910.552 kb on - strand at 910.559 kb on - strand at 910.559 kb on - strand at 910.560 kb on + strand at 910.571 kb on - strand at 910.571 kb on - strand at 910.572 kb on + strand at 910.576 kb on + strand at 910.576 kb on + strand at 910.593 kb on + strand at 910.604 kb on - strand at 910.610 kb on - strand at 910.611 kb on + strand at 910.611 kb on + strand at 910.611 kb on + strand at 910.613 kb on - strand at 910.614 kb on + strand at 910.614 kb on + strand at 910.635 kb on + strand at 910.687 kb on + strand, within MMP_RS04780 at 910.687 kb on + strand, within MMP_RS04780 at 910.844 kb on - strand, within MMP_RS04780 at 910.845 kb on + strand, within MMP_RS04780 at 910.845 kb on + strand, within MMP_RS04780 at 910.846 kb on - strand, within MMP_RS04780 at 910.898 kb on - strand, within MMP_RS04780 at 910.924 kb on + strand, within MMP_RS04780 at 910.927 kb on + strand at 910.941 kb on + strand at 910.941 kb on + strand at 910.977 kb on - strand at 910.977 kb on - strand at 910.978 kb on + strand at 910.978 kb on + strand at 910.978 kb on + strand at 910.992 kb on - strand at 910.995 kb on - strand at 910.995 kb on - strand at 910.995 kb on - strand at 910.996 kb on + strand at 910.996 kb on + strand at 910.996 kb on + strand at 911.001 kb on - strand at 911.001 kb on - strand at 911.001 kb on - strand at 911.002 kb on + strand at 911.002 kb on + strand at 911.005 kb on - strand at 911.006 kb on + strand at 911.009 kb on - strand at 911.010 kb on + strand at 911.022 kb on - strand at 911.022 kb on - strand at 911.023 kb on + strand at 911.023 kb on + strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.024 kb on - strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.025 kb on + strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.027 kb on - strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.028 kb on + strand at 911.029 kb on - strand at 911.029 kb on - strand at 911.029 kb on - strand at 911.029 kb on - strand at 911.029 kb on - strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.030 kb on + strand at 911.031 kb on - strand at 911.031 kb on - strand at 911.031 kb on - strand at 911.031 kb on - strand at 911.032 kb on + strand at 911.032 kb on + strand at 911.032 kb on + strand at 911.051 kb on + strand at 911.055 kb on - strand at 911.055 kb on - strand at 911.055 kb on - strand at 911.055 kb on - strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.056 kb on + strand at 911.057 kb on - strand at 911.057 kb on - strand at 911.057 kb on - strand at 911.057 kb on - strand at 911.058 kb on + strand at 911.058 kb on + strand at 911.058 kb on + strand at 911.091 kb on + strand at 911.160 kb on + strand, within MMP_RS04785 at 911.185 kb on - strand, within MMP_RS04785 at 911.187 kb on - strand, within MMP_RS04785 at 911.204 kb on - strand, within MMP_RS04785 at 911.205 kb on + strand, within MMP_RS04785 at 911.280 kb on + strand, within MMP_RS04785 at 911.393 kb on + strand, within MMP_RS04785 at 911.403 kb on + strand, within MMP_RS04785 at 911.408 kb on - strand, within MMP_RS04785 at 911.417 kb on - strand, within MMP_RS04785 at 911.419 kb on - strand, within MMP_RS04785 at 911.419 kb on - strand, within MMP_RS04785 at 911.420 kb on + strand, within MMP_RS04785 at 911.422 kb on - strand, within MMP_RS04785 at 911.422 kb on - strand, within MMP_RS04785 at 911.425 kb on - strand, within MMP_RS04785 at 911.436 kb on + strand, within MMP_RS04785 at 911.451 kb on + strand, within MMP_RS04785 at 911.455 kb on - strand, within MMP_RS04785 at 911.461 kb on - strand, within MMP_RS04785 at 911.461 kb on - strand, within MMP_RS04785
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 908,231 - -4.0 908,231 - -3.9 908,232 + -2.1 908,294 - -3.6 908,322 + -5.2 908,362 - -3.4 908,376 + -2.9 908,376 + -3.1 908,376 + -5.6 908,376 + -3.1 908,377 - -4.0 908,377 - -4.8 908,377 - -3.2 908,378 + -4.1 908,378 + -4.6 908,378 + -3.9 908,378 + -3.5 908,378 + -2.3 908,381 - -4.0 908,381 - -0.1 908,382 + -4.4 908,418 - -0.4 908,418 - +0.5 908,463 - -1.3 908,570 + -2.9 908,654 - -3.2 908,658 - -3.7 908,659 + -3.5 908,864 - -3.1 909,183 + -2.5 909,185 - -3.5 909,243 + -3.2 909,388 - MMP_RS04775 0.14 -4.0 909,388 - MMP_RS04775 0.14 -3.4 909,389 + MMP_RS04775 0.14 -2.0 909,598 - MMP_RS04775 0.31 -3.7 909,868 + MMP_RS04775 0.52 -0.9 909,874 - MMP_RS04775 0.53 -3.3 909,933 - -1.2 910,015 + MMP_RS04775 0.64 -2.0 910,015 + MMP_RS04775 0.64 -3.4 910,239 - MMP_RS04775 0.82 -3.4 910,393 + -2.8 910,393 + -2.1 910,393 + -3.2 910,455 - -3.0 910,472 - -2.9 910,473 + -2.5 910,473 + -3.8 910,473 + -2.5 910,477 + -2.0 910,478 - -3.4 910,524 - -3.2 910,525 + -4.3 910,529 - -4.1 910,531 - +1.7 910,531 - -3.6 910,552 - +0.2 910,559 - +0.9 910,559 - +0.5 910,560 + -2.9 910,571 - +1.1 910,571 - -4.2 910,572 + +0.4 910,576 + -0.3 910,576 + +0.3 910,593 + -1.6 910,604 - -3.0 910,610 - -3.6 910,611 + -5.0 910,611 + -4.8 910,611 + +0.1 910,613 - -3.3 910,614 + -0.9 910,614 + -2.2 910,635 + -2.6 910,687 + MMP_RS04780 0.18 -2.2 910,687 + MMP_RS04780 0.18 -3.1 910,844 - MMP_RS04780 0.65 -4.3 910,845 + MMP_RS04780 0.65 -3.6 910,845 + MMP_RS04780 0.65 -0.9 910,846 - MMP_RS04780 0.66 -2.1 910,898 - MMP_RS04780 0.81 -3.0 910,924 + MMP_RS04780 0.89 -2.3 910,927 + -2.7 910,941 + -1.2 910,941 + +1.4 910,977 - -0.2 910,977 - +2.0 910,978 + -0.4 910,978 + +0.3 910,978 + -0.9 910,992 - -0.0 910,995 - +1.9 910,995 - -1.2 910,995 - -1.0 910,996 + +0.3 910,996 + -0.5 910,996 + +2.6 911,001 - -0.2 911,001 - +1.6 911,001 - -0.1 911,002 + +0.2 911,002 + +2.0 911,005 - +0.2 911,006 + +0.4 911,009 - -0.4 911,010 + -0.2 911,022 - -1.3 911,022 - +0.9 911,023 + -0.1 911,023 + +0.5 911,024 - -0.6 911,024 - +0.9 911,024 - +1.1 911,024 - +1.2 911,024 - +0.1 911,024 - +1.6 911,024 - +1.3 911,024 - +0.8 911,024 - +0.4 911,025 + +0.0 911,025 + -1.2 911,025 + +0.4 911,025 + -1.5 911,025 + -0.6 911,025 + -0.2 911,025 + +1.4 911,025 + +1.3 911,027 - -0.0 911,027 - -1.2 911,027 - +0.8 911,027 - -0.2 911,027 - +0.2 911,027 - +2.7 911,027 - +1.4 911,027 - +0.0 911,027 - -0.0 911,027 - +0.2 911,027 - -1.3 911,028 + +0.7 911,028 + -1.2 911,028 + +0.9 911,028 + +0.7 911,028 + +1.6 911,028 + -0.0 911,028 + +0.0 911,028 + -0.1 911,028 + +0.8 911,028 + +0.7 911,028 + -1.8 911,028 + +0.6 911,029 - +0.7 911,029 - -1.3 911,029 - +1.7 911,029 - +0.4 911,029 - -1.4 911,030 + -0.3 911,030 + +0.6 911,030 + +1.1 911,030 + +0.4 911,030 + -0.4 911,030 + -1.9 911,031 - -1.5 911,031 - -0.2 911,031 - +0.0 911,031 - +0.2 911,032 + -1.7 911,032 + +0.9 911,032 + +1.1 911,051 + +1.0 911,055 - +1.1 911,055 - -0.5 911,055 - +0.5 911,055 - +1.4 911,056 + +1.0 911,056 + -0.7 911,056 + +0.4 911,056 + +1.4 911,056 + -0.4 911,056 + +4.6 911,057 - +1.2 911,057 - +0.6 911,057 - -0.2 911,057 - +0.0 911,058 + +1.3 911,058 + -0.8 911,058 + +0.5 911,091 + +0.3 911,160 + MMP_RS04785 0.13 +0.4 911,185 - MMP_RS04785 0.17 -1.7 911,187 - MMP_RS04785 0.18 +0.5 911,204 - MMP_RS04785 0.20 +2.2 911,205 + MMP_RS04785 0.20 +0.8 911,280 + MMP_RS04785 0.32 -0.2 911,393 + MMP_RS04785 0.49 +0.8 911,403 + MMP_RS04785 0.51 +0.1 911,408 - MMP_RS04785 0.51 +0.6 911,417 - MMP_RS04785 0.53 +0.1 911,419 - MMP_RS04785 0.53 -0.8 911,419 - MMP_RS04785 0.53 +0.4 911,420 + MMP_RS04785 0.53 +0.3 911,422 - MMP_RS04785 0.54 +1.0 911,422 - MMP_RS04785 0.54 +1.3 911,425 - MMP_RS04785 0.54 +1.3 911,436 + MMP_RS04785 0.56 -1.4 911,451 + MMP_RS04785 0.58 +0.7 911,455 - MMP_RS04785 0.59 +0.9 911,461 - MMP_RS04785 0.60 +0.7 911,461 - MMP_RS04785 0.60 +0.9
Or see this region's nucleotide sequence