Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04775

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04765 and MMP_RS04770 are separated by 97 nucleotidesMMP_RS04770 and MMP_RS04775 are separated by 31 nucleotidesMMP_RS04775 and MMP_RS04780 are separated by 165 nucleotidesMMP_RS04780 and MMP_RS04785 are separated by 113 nucleotides MMP_RS04765: MMP_RS04765 - asparagine synthase (glutamine-hydrolyzing), at 906,776 to 908,317 _RS04765 MMP_RS04770: MMP_RS04770 - dihydroorotate dehydrogenase electron transfer subunit, at 908,415 to 909,182 _RS04770 MMP_RS04775: MMP_RS04775 - adenosylhomocysteinase, at 909,214 to 910,461 _RS04775 MMP_RS04780: MMP_RS04780 - ribonuclease P, at 910,627 to 910,959 _RS04780 MMP_RS04785: MMP_RS04785 - hypothetical protein, at 911,073 to 911,723 _RS04785 Position (kb) 909 910 911Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 908.231 kb on - strandat 908.231 kb on - strandat 908.232 kb on + strandat 908.294 kb on - strandat 908.322 kb on + strandat 908.362 kb on - strandat 908.376 kb on + strandat 908.376 kb on + strandat 908.376 kb on + strandat 908.376 kb on + strandat 908.377 kb on - strandat 908.377 kb on - strandat 908.377 kb on - strandat 908.378 kb on + strandat 908.378 kb on + strandat 908.378 kb on + strandat 908.378 kb on + strandat 908.378 kb on + strandat 908.381 kb on - strandat 908.381 kb on - strandat 908.382 kb on + strandat 908.418 kb on - strandat 908.418 kb on - strandat 908.463 kb on - strandat 908.570 kb on + strandat 908.654 kb on - strandat 908.658 kb on - strandat 908.659 kb on + strandat 908.864 kb on - strandat 909.183 kb on + strandat 909.185 kb on - strandat 909.243 kb on + strandat 909.388 kb on - strand, within MMP_RS04775at 909.388 kb on - strand, within MMP_RS04775at 909.389 kb on + strand, within MMP_RS04775at 909.598 kb on - strand, within MMP_RS04775at 909.868 kb on + strand, within MMP_RS04775at 909.874 kb on - strand, within MMP_RS04775at 909.933 kb on - strandat 910.015 kb on + strand, within MMP_RS04775at 910.015 kb on + strand, within MMP_RS04775at 910.239 kb on - strand, within MMP_RS04775at 910.393 kb on + strandat 910.393 kb on + strandat 910.393 kb on + strandat 910.455 kb on - strandat 910.472 kb on - strandat 910.473 kb on + strandat 910.473 kb on + strandat 910.473 kb on + strandat 910.477 kb on + strandat 910.478 kb on - strandat 910.524 kb on - strandat 910.525 kb on + strandat 910.529 kb on - strandat 910.531 kb on - strandat 910.531 kb on - strandat 910.552 kb on - strandat 910.559 kb on - strandat 910.559 kb on - strandat 910.560 kb on + strandat 910.571 kb on - strandat 910.571 kb on - strandat 910.572 kb on + strandat 910.576 kb on + strandat 910.576 kb on + strandat 910.593 kb on + strandat 910.604 kb on - strandat 910.610 kb on - strandat 910.611 kb on + strandat 910.611 kb on + strandat 910.611 kb on + strandat 910.613 kb on - strandat 910.614 kb on + strandat 910.614 kb on + strandat 910.635 kb on + strandat 910.687 kb on + strand, within MMP_RS04780at 910.687 kb on + strand, within MMP_RS04780at 910.844 kb on - strand, within MMP_RS04780at 910.845 kb on + strand, within MMP_RS04780at 910.845 kb on + strand, within MMP_RS04780at 910.846 kb on - strand, within MMP_RS04780at 910.898 kb on - strand, within MMP_RS04780at 910.924 kb on + strand, within MMP_RS04780at 910.927 kb on + strandat 910.941 kb on + strandat 910.941 kb on + strandat 910.977 kb on - strandat 910.977 kb on - strandat 910.978 kb on + strandat 910.978 kb on + strandat 910.978 kb on + strandat 910.992 kb on - strandat 910.995 kb on - strandat 910.995 kb on - strandat 910.995 kb on - strandat 910.996 kb on + strandat 910.996 kb on + strandat 910.996 kb on + strandat 911.001 kb on - strandat 911.001 kb on - strandat 911.001 kb on - strandat 911.002 kb on + strandat 911.002 kb on + strandat 911.005 kb on - strandat 911.006 kb on + strandat 911.009 kb on - strandat 911.010 kb on + strandat 911.022 kb on - strandat 911.022 kb on - strandat 911.023 kb on + strandat 911.023 kb on + strandat 911.024 kb on - strandat 911.024 kb on - strandat 911.024 kb on - strandat 911.024 kb on - strandat 911.024 kb on - strandat 911.024 kb on - strandat 911.024 kb on - strandat 911.024 kb on - strandat 911.024 kb on - strandat 911.025 kb on + strandat 911.025 kb on + strandat 911.025 kb on + strandat 911.025 kb on + strandat 911.025 kb on + strandat 911.025 kb on + strandat 911.025 kb on + strandat 911.025 kb on + strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.027 kb on - strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.028 kb on + strandat 911.029 kb on - strandat 911.029 kb on - strandat 911.029 kb on - strandat 911.029 kb on - strandat 911.029 kb on - strandat 911.030 kb on + strandat 911.030 kb on + strandat 911.030 kb on + strandat 911.030 kb on + strandat 911.030 kb on + strandat 911.030 kb on + strandat 911.031 kb on - strandat 911.031 kb on - strandat 911.031 kb on - strandat 911.031 kb on - strandat 911.032 kb on + strandat 911.032 kb on + strandat 911.032 kb on + strandat 911.051 kb on + strandat 911.055 kb on - strandat 911.055 kb on - strandat 911.055 kb on - strandat 911.055 kb on - strandat 911.056 kb on + strandat 911.056 kb on + strandat 911.056 kb on + strandat 911.056 kb on + strandat 911.056 kb on + strandat 911.056 kb on + strandat 911.057 kb on - strandat 911.057 kb on - strandat 911.057 kb on - strandat 911.057 kb on - strandat 911.058 kb on + strandat 911.058 kb on + strandat 911.058 kb on + strandat 911.091 kb on + strandat 911.160 kb on + strand, within MMP_RS04785at 911.185 kb on - strand, within MMP_RS04785at 911.187 kb on - strand, within MMP_RS04785at 911.204 kb on - strand, within MMP_RS04785at 911.205 kb on + strand, within MMP_RS04785at 911.280 kb on + strand, within MMP_RS04785at 911.393 kb on + strand, within MMP_RS04785at 911.403 kb on + strand, within MMP_RS04785at 911.408 kb on - strand, within MMP_RS04785at 911.417 kb on - strand, within MMP_RS04785at 911.419 kb on - strand, within MMP_RS04785at 911.419 kb on - strand, within MMP_RS04785at 911.420 kb on + strand, within MMP_RS04785at 911.422 kb on - strand, within MMP_RS04785at 911.422 kb on - strand, within MMP_RS04785at 911.425 kb on - strand, within MMP_RS04785at 911.436 kb on + strand, within MMP_RS04785at 911.451 kb on + strand, within MMP_RS04785at 911.455 kb on - strand, within MMP_RS04785at 911.461 kb on - strand, within MMP_RS04785at 911.461 kb on - strand, within MMP_RS04785

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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908,231 - -4.0
908,231 - -3.9
908,232 + -2.1
908,294 - -3.6
908,322 + -5.2
908,362 - -3.4
908,376 + -2.9
908,376 + -3.1
908,376 + -5.6
908,376 + -3.1
908,377 - -4.0
908,377 - -4.8
908,377 - -3.2
908,378 + -4.1
908,378 + -4.6
908,378 + -3.9
908,378 + -3.5
908,378 + -2.3
908,381 - -4.0
908,381 - -0.1
908,382 + -4.4
908,418 - -0.4
908,418 - +0.5
908,463 - -1.3
908,570 + -2.9
908,654 - -3.2
908,658 - -3.7
908,659 + -3.5
908,864 - -3.1
909,183 + -2.5
909,185 - -3.5
909,243 + -3.2
909,388 - MMP_RS04775 0.14 -4.0
909,388 - MMP_RS04775 0.14 -3.4
909,389 + MMP_RS04775 0.14 -2.0
909,598 - MMP_RS04775 0.31 -3.7
909,868 + MMP_RS04775 0.52 -0.9
909,874 - MMP_RS04775 0.53 -3.3
909,933 - -1.2
910,015 + MMP_RS04775 0.64 -2.0
910,015 + MMP_RS04775 0.64 -3.4
910,239 - MMP_RS04775 0.82 -3.4
910,393 + -2.8
910,393 + -2.1
910,393 + -3.2
910,455 - -3.0
910,472 - -2.9
910,473 + -2.5
910,473 + -3.8
910,473 + -2.5
910,477 + -2.0
910,478 - -3.4
910,524 - -3.2
910,525 + -4.3
910,529 - -4.1
910,531 - +1.7
910,531 - -3.6
910,552 - +0.2
910,559 - +0.9
910,559 - +0.5
910,560 + -2.9
910,571 - +1.1
910,571 - -4.2
910,572 + +0.4
910,576 + -0.3
910,576 + +0.3
910,593 + -1.6
910,604 - -3.0
910,610 - -3.6
910,611 + -5.0
910,611 + -4.8
910,611 + +0.1
910,613 - -3.3
910,614 + -0.9
910,614 + -2.2
910,635 + -2.6
910,687 + MMP_RS04780 0.18 -2.2
910,687 + MMP_RS04780 0.18 -3.1
910,844 - MMP_RS04780 0.65 -4.3
910,845 + MMP_RS04780 0.65 -3.6
910,845 + MMP_RS04780 0.65 -0.9
910,846 - MMP_RS04780 0.66 -2.1
910,898 - MMP_RS04780 0.81 -3.0
910,924 + MMP_RS04780 0.89 -2.3
910,927 + -2.7
910,941 + -1.2
910,941 + +1.4
910,977 - -0.2
910,977 - +2.0
910,978 + -0.4
910,978 + +0.3
910,978 + -0.9
910,992 - -0.0
910,995 - +1.9
910,995 - -1.2
910,995 - -1.0
910,996 + +0.3
910,996 + -0.5
910,996 + +2.6
911,001 - -0.2
911,001 - +1.6
911,001 - -0.1
911,002 + +0.2
911,002 + +2.0
911,005 - +0.2
911,006 + +0.4
911,009 - -0.4
911,010 + -0.2
911,022 - -1.3
911,022 - +0.9
911,023 + -0.1
911,023 + +0.5
911,024 - -0.6
911,024 - +0.9
911,024 - +1.1
911,024 - +1.2
911,024 - +0.1
911,024 - +1.6
911,024 - +1.3
911,024 - +0.8
911,024 - +0.4
911,025 + +0.0
911,025 + -1.2
911,025 + +0.4
911,025 + -1.5
911,025 + -0.6
911,025 + -0.2
911,025 + +1.4
911,025 + +1.3
911,027 - -0.0
911,027 - -1.2
911,027 - +0.8
911,027 - -0.2
911,027 - +0.2
911,027 - +2.7
911,027 - +1.4
911,027 - +0.0
911,027 - -0.0
911,027 - +0.2
911,027 - -1.3
911,028 + +0.7
911,028 + -1.2
911,028 + +0.9
911,028 + +0.7
911,028 + +1.6
911,028 + -0.0
911,028 + +0.0
911,028 + -0.1
911,028 + +0.8
911,028 + +0.7
911,028 + -1.8
911,028 + +0.6
911,029 - +0.7
911,029 - -1.3
911,029 - +1.7
911,029 - +0.4
911,029 - -1.4
911,030 + -0.3
911,030 + +0.6
911,030 + +1.1
911,030 + +0.4
911,030 + -0.4
911,030 + -1.9
911,031 - -1.5
911,031 - -0.2
911,031 - +0.0
911,031 - +0.2
911,032 + -1.7
911,032 + +0.9
911,032 + +1.1
911,051 + +1.0
911,055 - +1.1
911,055 - -0.5
911,055 - +0.5
911,055 - +1.4
911,056 + +1.0
911,056 + -0.7
911,056 + +0.4
911,056 + +1.4
911,056 + -0.4
911,056 + +4.6
911,057 - +1.2
911,057 - +0.6
911,057 - -0.2
911,057 - +0.0
911,058 + +1.3
911,058 + -0.8
911,058 + +0.5
911,091 + +0.3
911,160 + MMP_RS04785 0.13 +0.4
911,185 - MMP_RS04785 0.17 -1.7
911,187 - MMP_RS04785 0.18 +0.5
911,204 - MMP_RS04785 0.20 +2.2
911,205 + MMP_RS04785 0.20 +0.8
911,280 + MMP_RS04785 0.32 -0.2
911,393 + MMP_RS04785 0.49 +0.8
911,403 + MMP_RS04785 0.51 +0.1
911,408 - MMP_RS04785 0.51 +0.6
911,417 - MMP_RS04785 0.53 +0.1
911,419 - MMP_RS04785 0.53 -0.8
911,419 - MMP_RS04785 0.53 +0.4
911,420 + MMP_RS04785 0.53 +0.3
911,422 - MMP_RS04785 0.54 +1.0
911,422 - MMP_RS04785 0.54 +1.3
911,425 - MMP_RS04785 0.54 +1.3
911,436 + MMP_RS04785 0.56 -1.4
911,451 + MMP_RS04785 0.58 +0.7
911,455 - MMP_RS04785 0.59 +0.9
911,461 - MMP_RS04785 0.60 +0.7
911,461 - MMP_RS04785 0.60 +0.9

Or see this region's nucleotide sequence