Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04320

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04310 and MMP_RS04315 are separated by 268 nucleotidesMMP_RS04315 and MMP_RS04320 are separated by 24 nucleotidesMMP_RS04320 and MMP_RS04325 are separated by 123 nucleotides MMP_RS04310: MMP_RS04310 - hypothetical protein, at 822,505 to 822,849 _RS04310 MMP_RS04315: MMP_RS04315 - corrinoid protein, at 823,118 to 823,777 _RS04315 MMP_RS04320: MMP_RS04320 - uroporphyrinogen decarboxylase family protein, at 823,802 to 824,893 _RS04320 MMP_RS04325: MMP_RS04325 - MtaA/CmuA family methyltransferase, at 825,017 to 826,045 _RS04325 Position (kb) 823 824 825Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 822.861 kb on + strandat 822.861 kb on + strandat 822.865 kb on + strandat 822.865 kb on + strandat 822.869 kb on - strandat 822.870 kb on + strandat 822.870 kb on + strandat 822.875 kb on + strandat 822.886 kb on - strandat 822.896 kb on - strandat 822.896 kb on - strandat 822.897 kb on + strandat 822.897 kb on + strandat 822.899 kb on - strandat 822.900 kb on + strandat 822.900 kb on + strandat 822.900 kb on + strandat 822.902 kb on + strandat 822.902 kb on + strandat 822.902 kb on + strandat 822.907 kb on - strandat 822.907 kb on - strandat 822.953 kb on - strandat 822.970 kb on - strandat 822.971 kb on + strandat 822.973 kb on + strandat 822.978 kb on + strandat 822.983 kb on + strandat 822.985 kb on - strandat 823.141 kb on + strandat 823.143 kb on - strandat 823.265 kb on + strand, within MMP_RS04315at 823.286 kb on - strand, within MMP_RS04315at 823.318 kb on + strand, within MMP_RS04315at 823.340 kb on - strand, within MMP_RS04315at 823.340 kb on - strand, within MMP_RS04315at 823.340 kb on - strand, within MMP_RS04315at 823.340 kb on - strand, within MMP_RS04315at 823.341 kb on + strand, within MMP_RS04315at 823.341 kb on + strand, within MMP_RS04315at 823.341 kb on + strand, within MMP_RS04315at 823.341 kb on + strand, within MMP_RS04315at 823.360 kb on + strand, within MMP_RS04315at 823.371 kb on - strand, within MMP_RS04315at 823.491 kb on + strand, within MMP_RS04315at 823.547 kb on + strand, within MMP_RS04315at 823.645 kb on - strand, within MMP_RS04315at 823.983 kb on + strand, within MMP_RS04320at 824.026 kb on + strand, within MMP_RS04320at 824.078 kb on + strand, within MMP_RS04320at 824.088 kb on - strand, within MMP_RS04320at 824.224 kb on - strand, within MMP_RS04320at 824.299 kb on + strand, within MMP_RS04320at 824.320 kb on - strand, within MMP_RS04320at 824.395 kb on - strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.428 kb on + strand, within MMP_RS04320at 824.462 kb on - strand, within MMP_RS04320at 824.462 kb on - strand, within MMP_RS04320at 824.463 kb on + strand, within MMP_RS04320at 824.466 kb on - strand, within MMP_RS04320at 824.487 kb on - strand, within MMP_RS04320at 824.487 kb on - strand, within MMP_RS04320at 824.556 kb on - strand, within MMP_RS04320at 824.569 kb on + strand, within MMP_RS04320at 824.710 kb on - strand, within MMP_RS04320at 824.711 kb on + strand, within MMP_RS04320at 824.711 kb on + strand, within MMP_RS04320at 824.865 kb on - strandat 824.984 kb on + strandat 824.986 kb on + strandat 825.084 kb on - strandat 825.085 kb on + strandat 825.106 kb on - strandat 825.142 kb on + strand, within MMP_RS04325at 825.249 kb on - strand, within MMP_RS04325at 825.249 kb on - strand, within MMP_RS04325at 825.250 kb on + strand, within MMP_RS04325at 825.310 kb on - strand, within MMP_RS04325at 825.589 kb on + strand, within MMP_RS04325at 825.589 kb on + strand, within MMP_RS04325at 825.731 kb on + strand, within MMP_RS04325at 825.731 kb on + strand, within MMP_RS04325at 825.798 kb on - strand, within MMP_RS04325at 825.814 kb on - strand, within MMP_RS04325

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
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822,861 + +0.5
822,861 + -1.9
822,865 + +1.0
822,865 + -0.2
822,869 - -2.0
822,870 + +0.3
822,870 + -2.5
822,875 + +0.0
822,886 - +0.8
822,896 - +2.1
822,896 - -5.5
822,897 + +1.2
822,897 + +0.5
822,899 - -0.1
822,900 + -1.1
822,900 + +1.0
822,900 + -1.3
822,902 + +0.5
822,902 + -0.2
822,902 + -0.5
822,907 - -0.8
822,907 - -0.5
822,953 - +0.3
822,970 - +0.0
822,971 + +0.2
822,973 + +2.1
822,978 + -1.0
822,983 + +0.1
822,985 - -0.2
823,141 + +0.9
823,143 - -1.6
823,265 + MMP_RS04315 0.22 -1.6
823,286 - MMP_RS04315 0.25 -1.1
823,318 + MMP_RS04315 0.30 -0.1
823,340 - MMP_RS04315 0.34 +0.6
823,340 - MMP_RS04315 0.34 +0.5
823,340 - MMP_RS04315 0.34 +0.7
823,340 - MMP_RS04315 0.34 +1.3
823,341 + MMP_RS04315 0.34 -0.4
823,341 + MMP_RS04315 0.34 +1.3
823,341 + MMP_RS04315 0.34 +0.3
823,341 + MMP_RS04315 0.34 -0.3
823,360 + MMP_RS04315 0.37 +0.8
823,371 - MMP_RS04315 0.38 +0.2
823,491 + MMP_RS04315 0.57 -0.7
823,547 + MMP_RS04315 0.65 -0.3
823,645 - MMP_RS04315 0.80 -2.0
823,983 + MMP_RS04320 0.17 +0.4
824,026 + MMP_RS04320 0.21 +0.7
824,078 + MMP_RS04320 0.25 -0.8
824,088 - MMP_RS04320 0.26 +0.7
824,224 - MMP_RS04320 0.39 -1.5
824,299 + MMP_RS04320 0.46 -1.3
824,320 - MMP_RS04320 0.47 +0.2
824,395 - MMP_RS04320 0.54 -0.8
824,428 + MMP_RS04320 0.57 +0.7
824,428 + MMP_RS04320 0.57 -0.8
824,428 + MMP_RS04320 0.57 +0.6
824,462 - MMP_RS04320 0.60 -0.7
824,462 - MMP_RS04320 0.60 -0.8
824,463 + MMP_RS04320 0.61 -0.3
824,466 - MMP_RS04320 0.61 +0.4
824,487 - MMP_RS04320 0.63 -0.2
824,487 - MMP_RS04320 0.63 -0.4
824,556 - MMP_RS04320 0.69 +0.4
824,569 + MMP_RS04320 0.70 -0.4
824,710 - MMP_RS04320 0.83 +0.4
824,711 + MMP_RS04320 0.83 -1.0
824,711 + MMP_RS04320 0.83 +0.2
824,865 - +0.5
824,984 + -0.4
824,986 + +0.5
825,084 - +0.9
825,085 + -1.1
825,106 - -2.3
825,142 + MMP_RS04325 0.12 +0.0
825,249 - MMP_RS04325 0.23 -0.8
825,249 - MMP_RS04325 0.23 -0.4
825,250 + MMP_RS04325 0.23 -1.0
825,310 - MMP_RS04325 0.28 -4.2
825,589 + MMP_RS04325 0.56 -0.0
825,589 + MMP_RS04325 0.56 -0.2
825,731 + MMP_RS04325 0.69 -0.4
825,731 + MMP_RS04325 0.69 +1.1
825,798 - MMP_RS04325 0.76 +0.5
825,814 - MMP_RS04325 0.77 -0.3

Or see this region's nucleotide sequence