Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04160 and MMP_RS04165 are separated by 309 nucleotides MMP_RS04165 and MMP_RS04170 are separated by 139 nucleotides
MMP_RS04160: MMP_RS04160 - hypothetical protein, at 790,662 to 791,330
_RS04160
MMP_RS04165: MMP_RS04165 - TetR/AcrR family transcriptional regulator, at 791,640 to 792,218
_RS04165
MMP_RS04170: MMP_RS04170 - DUF362 domain-containing protein, at 792,358 to 793,440
_RS04170
Position (kb) 791
792
793 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 790.654 kb on - strand at 790.661 kb on + strand at 790.684 kb on - strand at 790.708 kb on - strand at 790.712 kb on - strand at 790.736 kb on - strand, within MMP_RS04160 at 790.736 kb on - strand, within MMP_RS04160 at 790.736 kb on - strand, within MMP_RS04160 at 790.737 kb on + strand, within MMP_RS04160 at 790.737 kb on + strand, within MMP_RS04160 at 790.737 kb on + strand, within MMP_RS04160 at 790.737 kb on + strand, within MMP_RS04160 at 790.738 kb on - strand, within MMP_RS04160 at 790.739 kb on + strand, within MMP_RS04160 at 790.765 kb on - strand, within MMP_RS04160 at 790.864 kb on - strand, within MMP_RS04160 at 790.865 kb on + strand, within MMP_RS04160 at 790.865 kb on + strand, within MMP_RS04160 at 790.907 kb on - strand, within MMP_RS04160 at 790.908 kb on + strand, within MMP_RS04160 at 790.910 kb on - strand, within MMP_RS04160 at 790.910 kb on - strand, within MMP_RS04160 at 790.911 kb on + strand, within MMP_RS04160 at 790.911 kb on + strand, within MMP_RS04160 at 790.927 kb on + strand, within MMP_RS04160 at 790.931 kb on - strand, within MMP_RS04160 at 790.931 kb on - strand, within MMP_RS04160 at 790.967 kb on + strand, within MMP_RS04160 at 790.967 kb on + strand, within MMP_RS04160 at 790.976 kb on - strand, within MMP_RS04160 at 790.977 kb on + strand, within MMP_RS04160 at 790.986 kb on - strand, within MMP_RS04160 at 790.994 kb on + strand, within MMP_RS04160 at 791.007 kb on - strand, within MMP_RS04160 at 791.008 kb on + strand, within MMP_RS04160 at 791.104 kb on - strand, within MMP_RS04160 at 791.105 kb on + strand, within MMP_RS04160 at 791.122 kb on - strand, within MMP_RS04160 at 791.147 kb on - strand, within MMP_RS04160 at 791.148 kb on + strand, within MMP_RS04160 at 791.217 kb on - strand, within MMP_RS04160 at 791.234 kb on - strand, within MMP_RS04160 at 791.241 kb on + strand, within MMP_RS04160 at 791.283 kb on - strand at 791.293 kb on + strand at 791.305 kb on + strand at 791.305 kb on + strand at 791.307 kb on + strand at 791.307 kb on + strand at 791.323 kb on + strand at 791.347 kb on - strand at 791.349 kb on - strand at 791.356 kb on - strand at 791.357 kb on + strand at 791.389 kb on + strand at 791.443 kb on - strand at 791.444 kb on + strand at 791.445 kb on - strand at 791.446 kb on + strand at 791.446 kb on + strand at 791.501 kb on - strand at 791.504 kb on - strand at 791.513 kb on - strand at 791.514 kb on + strand at 791.517 kb on - strand at 791.521 kb on - strand at 791.552 kb on + strand at 791.566 kb on + strand at 791.569 kb on - strand at 791.569 kb on - strand at 791.570 kb on + strand at 791.582 kb on + strand at 791.590 kb on + strand at 791.592 kb on - strand at 791.598 kb on + strand at 791.635 kb on - strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.637 kb on - strand at 791.637 kb on - strand at 791.637 kb on - strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.638 kb on + strand at 791.640 kb on + strand at 792.005 kb on + strand, within MMP_RS04165 at 792.016 kb on + strand, within MMP_RS04165 at 792.074 kb on + strand, within MMP_RS04165 at 792.124 kb on - strand, within MMP_RS04165 at 792.171 kb on + strand at 792.273 kb on + strand at 792.273 kb on + strand at 792.295 kb on - strand at 792.341 kb on - strand at 792.365 kb on - strand at 792.379 kb on + strand at 792.398 kb on - strand at 792.401 kb on - strand at 792.405 kb on + strand at 792.426 kb on - strand at 792.427 kb on + strand at 792.427 kb on + strand at 792.427 kb on + strand at 792.462 kb on - strand at 792.488 kb on - strand, within MMP_RS04170 at 792.489 kb on + strand, within MMP_RS04170 at 792.493 kb on + strand, within MMP_RS04170 at 792.493 kb on + strand, within MMP_RS04170 at 792.495 kb on - strand, within MMP_RS04170 at 792.495 kb on - strand, within MMP_RS04170 at 792.531 kb on - strand, within MMP_RS04170 at 792.534 kb on - strand, within MMP_RS04170 at 792.617 kb on + strand, within MMP_RS04170 at 792.651 kb on + strand, within MMP_RS04170 at 792.688 kb on + strand, within MMP_RS04170 at 792.691 kb on - strand, within MMP_RS04170 at 792.691 kb on - strand, within MMP_RS04170 at 792.695 kb on - strand, within MMP_RS04170 at 792.696 kb on + strand, within MMP_RS04170 at 792.722 kb on - strand, within MMP_RS04170 at 792.729 kb on + strand, within MMP_RS04170 at 792.795 kb on - strand, within MMP_RS04170 at 792.803 kb on - strand, within MMP_RS04170 at 792.822 kb on - strand, within MMP_RS04170 at 792.828 kb on - strand, within MMP_RS04170 at 793.060 kb on - strand, within MMP_RS04170 at 793.061 kb on + strand, within MMP_RS04170 at 793.062 kb on - strand, within MMP_RS04170 at 793.062 kb on - strand, within MMP_RS04170 at 793.098 kb on - strand, within MMP_RS04170 at 793.152 kb on + strand, within MMP_RS04170 at 793.172 kb on - strand, within MMP_RS04170 at 793.172 kb on - strand, within MMP_RS04170 at 793.173 kb on + strand, within MMP_RS04170 at 793.173 kb on + strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.194 kb on - strand, within MMP_RS04170 at 793.195 kb on + strand, within MMP_RS04170
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations remove 790,654 - -0.0 790,661 + -0.7 790,684 - +1.5 790,708 - +0.7 790,712 - -0.7 790,736 - MMP_RS04160 0.11 +0.2 790,736 - MMP_RS04160 0.11 +0.2 790,736 - MMP_RS04160 0.11 +1.5 790,737 + MMP_RS04160 0.11 +0.2 790,737 + MMP_RS04160 0.11 -0.2 790,737 + MMP_RS04160 0.11 +0.4 790,737 + MMP_RS04160 0.11 +1.0 790,738 - MMP_RS04160 0.11 -0.3 790,739 + MMP_RS04160 0.12 -2.4 790,765 - MMP_RS04160 0.15 -0.0 790,864 - MMP_RS04160 0.30 +0.8 790,865 + MMP_RS04160 0.30 +0.5 790,865 + MMP_RS04160 0.30 -2.7 790,907 - MMP_RS04160 0.37 +0.1 790,908 + MMP_RS04160 0.37 -1.6 790,910 - MMP_RS04160 0.37 -0.2 790,910 - MMP_RS04160 0.37 -0.9 790,911 + MMP_RS04160 0.37 -1.4 790,911 + MMP_RS04160 0.37 -1.1 790,927 + MMP_RS04160 0.40 -0.4 790,931 - MMP_RS04160 0.40 +0.9 790,931 - MMP_RS04160 0.40 -1.1 790,967 + MMP_RS04160 0.46 +0.8 790,967 + MMP_RS04160 0.46 -1.3 790,976 - MMP_RS04160 0.47 -0.3 790,977 + MMP_RS04160 0.47 +0.8 790,986 - MMP_RS04160 0.48 +0.8 790,994 + MMP_RS04160 0.50 +0.6 791,007 - MMP_RS04160 0.52 +0.4 791,008 + MMP_RS04160 0.52 -0.8 791,104 - MMP_RS04160 0.66 +0.5 791,105 + MMP_RS04160 0.66 -3.5 791,122 - MMP_RS04160 0.69 -1.9 791,147 - MMP_RS04160 0.72 +0.6 791,148 + MMP_RS04160 0.73 -1.3 791,217 - MMP_RS04160 0.83 -0.8 791,234 - MMP_RS04160 0.86 +0.7 791,241 + MMP_RS04160 0.87 +0.7 791,283 - +0.2 791,293 + +1.6 791,305 + -0.4 791,305 + +0.6 791,307 + -0.1 791,307 + +2.1 791,323 + -1.7 791,347 - +0.5 791,349 - +0.9 791,356 - +0.4 791,357 + +0.4 791,389 + +1.1 791,443 - +2.0 791,444 + +0.4 791,445 - -0.7 791,446 + -0.2 791,446 + +0.6 791,501 - -0.0 791,504 - -0.3 791,513 - +0.9 791,514 + +1.4 791,517 - +1.7 791,521 - +0.1 791,552 + -0.5 791,566 + +0.1 791,569 - +1.8 791,569 - +2.0 791,570 + +2.1 791,582 + +0.2 791,590 + +3.0 791,592 - +1.5 791,598 + +1.6 791,635 - +2.2 791,636 + +0.3 791,636 + +1.2 791,636 + +1.6 791,637 - +1.3 791,637 - +2.5 791,637 - +2.1 791,638 + +1.8 791,638 + +1.7 791,638 + +2.2 791,638 + +1.3 791,638 + +1.7 791,640 + +0.9 792,005 + MMP_RS04165 0.63 +2.1 792,016 + MMP_RS04165 0.65 +2.0 792,074 + MMP_RS04165 0.75 +1.2 792,124 - MMP_RS04165 0.84 +2.4 792,171 + +2.1 792,273 + -0.1 792,273 + +0.8 792,295 - +0.5 792,341 - +0.0 792,365 - -4.1 792,379 + +0.8 792,398 - +2.9 792,401 - +0.0 792,405 + -0.8 792,426 - +0.7 792,427 + +0.2 792,427 + -0.0 792,427 + -0.7 792,462 - +0.1 792,488 - MMP_RS04170 0.12 +0.8 792,489 + MMP_RS04170 0.12 +0.1 792,493 + MMP_RS04170 0.12 -0.8 792,493 + MMP_RS04170 0.12 +0.2 792,495 - MMP_RS04170 0.13 -1.3 792,495 - MMP_RS04170 0.13 +0.7 792,531 - MMP_RS04170 0.16 +0.1 792,534 - MMP_RS04170 0.16 +0.9 792,617 + MMP_RS04170 0.24 -0.3 792,651 + MMP_RS04170 0.27 +0.4 792,688 + MMP_RS04170 0.30 +0.6 792,691 - MMP_RS04170 0.31 -1.2 792,691 - MMP_RS04170 0.31 +1.0 792,695 - MMP_RS04170 0.31 +1.9 792,696 + MMP_RS04170 0.31 +0.6 792,722 - MMP_RS04170 0.34 +1.0 792,729 + MMP_RS04170 0.34 -0.2 792,795 - MMP_RS04170 0.40 +0.1 792,803 - MMP_RS04170 0.41 +0.5 792,822 - MMP_RS04170 0.43 -0.6 792,828 - MMP_RS04170 0.43 -2.8 793,060 - MMP_RS04170 0.65 +0.4 793,061 + MMP_RS04170 0.65 +0.4 793,062 - MMP_RS04170 0.65 +0.1 793,062 - MMP_RS04170 0.65 +2.4 793,098 - MMP_RS04170 0.68 -0.6 793,152 + MMP_RS04170 0.73 -0.9 793,172 - MMP_RS04170 0.75 +0.9 793,172 - MMP_RS04170 0.75 +0.6 793,173 + MMP_RS04170 0.75 +0.6 793,173 + MMP_RS04170 0.75 +1.4 793,190 - MMP_RS04170 0.77 -0.7 793,190 - MMP_RS04170 0.77 -3.3 793,190 - MMP_RS04170 0.77 +0.2 793,194 - MMP_RS04170 0.77 +1.4 793,195 + MMP_RS04170 0.77 -1.0
Or see this region's nucleotide sequence